Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2420 ATGATCGCACCCAATTTCATGGATGAGATAGACTGCGGAAGCTTCTTCGACCACATTGACGATCTCCTCGACTTCCCCGCCGAGGACGTCGACGCCGCCGCCTTACCCGCCACCGCCGCCAACTCCAACTCCTTCCCCACCATCTACTCCGACTCCGTCTTCTCCGCCAACTCCGCCTCCGACCTCTCCGCCGAGCTTTCCGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTTTCGAACTTCGTGGAGGACTCGTTCTCTGGTGGAAGCCTCACCATGAAGAAATTGGAGCCATCATCGTGCgccactaataataataataatgactcGGCTACGCACAGCCAATTCCAGACATCGAGCCCAGTTTCTGTCCTGGAAAGCAGCAGCTCTTGCTCTGGCGGTGAGAAGCCGGTGGCGCCGCTGCCTCGGAGCTCACCGCCGGAAATGGTTGTCCCCGTGCCGTGCGGTGGACGTGCACGCAGCAAGCGGCCACGCCCCGCCACATTCAAGCCTCGTCCTGCAATGCACCTCGTTTCCCCTGCTTCCTCTGTAGGGGAAAACACGCAGCGGAATTCGGATTCTGACAACTTTGCGGAGTCTCATCCGGTGATCAAGATAGCGAAGCAAGCTTCCGGGGAgcataagaagaagaagaagatcaaaGTGTCATGTCCATCGGGTGCTGCTTCTGGTGATGATACGAACCAGCAGACTGTGTCGGCGGCACAGGCAGTGAGGAAATGTATGCATTGTGAGATAACCAAGACGCCACAATGGAGGGCGGGGCCAATGGGGCCAAAAACACTATGCAATGCTTGTGGGGTTCGCTACAAATCAGGGAGGCTATTCCCAGAATACAGACCAGCCGCGAGCCCAACATTTTGCCCATCCGTGCACTCCAATTCCCATAAGAAGGTGCTTGAAATGAGAAACAAAACTCCTCCCCATTCAGCTGCCTCACCAGAGCTCATTCCAAACACTAACACCAGCCTTCCCCtggaggatggaatgggtggggggGGAAATGCATAG 1035 0.5237 MIAPNFMDEIDCGSFFDHIDDLLDFPAEDVDAAALPATAANSNSFPTIYSDSVFSANSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKLEPSSCATNNNNNDSATHSQFQTSSPVSVLESSSSCSGGEKPVAPLPRSSPPEMVVPVPCGGRARSKRPRPATFKPRPAMHLVSPASSVGENTQRNSDSDNFAESHPVIKIAKQASGEHKKKKKIKVSCPSGAASGDDTNQQTVSAAQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRNKTPPHSAASPELIPNTNTSLPLEDGMGGGGNA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2420 344 PIRSF Txn_fac_GATA_plant 1 333 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto8g2420 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 247 306 - -
Sto8g2420 344 MobiDBLite consensus disorder prediction 312 344 - -
Sto8g2420 344 SMART GATA_3 243 293 IPR000679 GO:0006355|GO:0043565
Sto8g2420 344 MobiDBLite consensus disorder prediction 103 174 - -
Sto8g2420 344 CDD ZnF_GATA 248 305 IPR000679 GO:0006355|GO:0043565
Sto8g2420 344 PANTHER GATA TRANSCRIPTION FACTOR 8 1 333 - -
Sto8g2420 344 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Sto8g2420 344 Gene3D - 243 293 IPR013088 GO:0006355|GO:0008270
Sto8g2420 344 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Sto8g2420 344 PANTHER GATA TRANSCRIPTION FACTOR 1 333 - -
Sto8g2420 344 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Sto8g2420 344 MobiDBLite consensus disorder prediction 103 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2420 Sto-Chr8 16508456 16509749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2420 19 313 C2C2-Gata Transcription Factor Family AT4G32890 37.667 6.45e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto8g2420 GATA 5.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2420 - - lang:109354556 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2420 8 16508456 16509749 Sto8g2420 8 16508456 16509749 ECH