Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2418 ATGTTTGTGGTTATGGATGAGAGGGCTTCCTCAGAGAAGTGCTTAGATTCTCAATTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCCATCAATTCAAAGGTCTTCTACTTTCCTCAAGGCCACGCTGAGCATGCCTATGGGAAAGTGGATTTCGGGTCAACCCGAATCCCCCCTCTCATCCCTTGCAGGGTCGCTGGTATGAAATACATGGCAGACCCTGACACAGATGAGGTGTTTGTGAAAATGAGGCTAAACCCTCTAAGGGAAAATGAAATGGGTCTTGAAGATGATTGTTTTGTGGGAAACAATGGAGATGAGGGTCAAGAAAAGCCAGCTTCTTTTGCAAAGACATTGACACAGTCTGATGCCAATAATGGTGGGGGTTTCTCTGTACCTCGTTATTGTGCAGAGACTATCTTTCCAAGGTTGGATTATTCTGCTGAGCCTCCTGTTCAGACCATTATTGCCAAGGATGTGCATGGGCAGAACTGGAAGTTTAGGCATATCTATAGAGGGACGCCTCGGAGACACCTTTTAACGACCGGGTGGAGCAATTTTGTGAACCATAAGAAGCTTGTTGCTGGGGATTCTATTGTGTTCTTGAGGGCTGAGAATGGGGATCTTTGTGTTGGAATAAGGAGGGCTAAGAAGGGGATTGGAGGTGGAATTGAGTATTCGTCGGGTTGGAACCATGTAGCCCCTCCTCCTCTATTTGGTGGGAATTCGGGTTTTCTGTGTGATGATGAAACCTCATTATTGAGGAGAAAATGTCATGAGGAGTTGAAGGGAAAAGTGGCACCTGAATCTGTTGTTGAGGCTGTAACTTCCGCGGTTAATGGCCGGTCCTTTGAGGTTGTCTACTACCCACGTGCTAGCACGCCGGAGTTCTGCGTTAAGGCCTCGTCTGTGAGAGCTGCAATGCAAATACAATGGTGTTCTGGGATGAGATTCAAAATGCCTTTTGAAACTGAGGACTCATCTAGGATAAGCTGGTTCATGGGAACAATATCTTCTGTTCAGATTGCTGATTCAGTTCGGTGGCCTGATTCTCCATGGCGTCTTTTACAGGTAGTATGGGATGAACCGGATTTACTTCAAAATGTGAAGTGTGTAAACCCTTGGTTAGTTGAACTAGTCTCAAACATGCCAACCTTCCATCTCTCTCCATTCTCACCACCGAGAAAGAAATCACGGTTTCTACAACACCCGGATTTTCCCCTTATCAACCAACTTCCCATGCCTCCGTTCTCCGGCAACCTTCTCAATCAAACTAACTCCCCATGTAACATTCAAGGCAATTATAGTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATGTGATTTCCCTTTCAACAAGCTGCAATCAGATATGCTTCTGGGTGGGTTTCCTAGGCTCGATCATGTGGTCCAGTCAGCTCGACCTCCTCGTGGCGCCTATAAGAGCAGCTCGATGAATAATGCTGATATATCTTGCTTGTTGACCGTGGGAAATCCCGGCCCAAGCTTGAAGGAACCGGTTGAAGCCAAAGCACCCCACATCTTGTTGTTCGGTCAACTCATTCGTACCGAGCAACAAACTTCGAATAGTAGCTGTGCTAGTACAACTGCGAATAGTTCATCTGAAGGGAATTCACAAAAGGCATCAAATGTTGTTTCTGATGGCTCGGCTTCTGCTTTGCATCAAAACAGTCAAACAGAGAATTCCTCTGAAGGAGGGTCTCCTAGCTGGTACAAAGACCAGCAAAGTTCTGATCTCAGAACCGAAAACGTTAGCCTTTTGTGTTTGGCTTTATGA 1821 0.4646 MFVVMDERASSEKCLDSQLWHACAGAMVQMPPINSKVFYFPQGHAEHAYGKVDFGSTRIPPLIPCRVAGMKYMADPDTDEVFVKMRLNPLRENEMGLEDDCFVGNNGDEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQNWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGIEYSSGWNHVAPPPLFGGNSGFLCDDETSLLRRKCHEELKGKVAPESVVEAVTSAVNGRSFEVVYYPRASTPEFCVKASSVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQIADSVRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFHLSPFSPPRKKSRFLQHPDFPLINQLPMPPFSGNLLNQTNSPCNIQGNYSPAGIQGARHAQFGLSPCDFPFNKLQSDMLLGGFPRLDHVVQSARPPRGAYKSSSMNNADISCLLTVGNPGPSLKEPVEAKAPHILLFGQLIRTEQQTSNSSCASTTANSSSEGNSQKASNVVSDGSASALHQNSQTENSSEGGSPSWYKDQQSSDLRTENVSLLCLAL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2418 606 SUPERFAMILY DNA-binding pseudobarrel domain 108 218 IPR015300 -
Sto8g2418 606 SMART B3_2 117 219 IPR003340 GO:0003677
Sto8g2418 606 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Sto8g2418 606 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Sto8g2418 606 MobiDBLite consensus disorder prediction 535 591 - -
Sto8g2418 606 PANTHER AUXIN RESPONSE FACTOR 16 8 586 - -
Sto8g2418 606 Gene3D - 313 387 - -
Sto8g2418 606 CDD B3_DNA 116 217 IPR003340 GO:0003677
Sto8g2418 606 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto8g2418 606 Gene3D - 115 219 IPR015300 -
Sto8g2418 606 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 586 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2418 Sto-Chr8 16495380 16497740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2418 1 596 B3 DNA Binding Superfamily AT4G30080 56.579 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto8g2418 B3 9.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2418 - - gmx:100803053 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0899 8 5668268 5670494 Sto8g2418 8 16495380 16497740 ECH
Sto13g3225 13 36199068 36200984 Sto8g2418 8 16495380 16497740 ECH
Sto8g2418 8 16495380 16497740 Sto8g2418 8 16495380 16497740 ECH