Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2336 ATGGATCCAAAAGTGAGCCTTTGTGCTAACACCTGGACAAGGCCGCCTTCCTTAGTCTCCCGTCAGAATCAAATGCTGGAAAATTTGTCACCTGATCCAACCTCTTTCCCGGATTTTGGTTTGCTGCAAAATCAACAGAGATGGGAAGATCCCTCTGTCTCAGATTTTGGTATCCAGGTTGAAGCACCATTTAAAGATTTCAATCAAGGCGCTGGAACTCAGCCTTCGCTTCTGCCATGCAACTCCAACAGTGAGATTAAGATCCCCAATCAAGAACATTGTCTGTTGGGTGACACAACTCGAACCGGTAAACTCCAAGATTGGGATCCCACTGTGATGTTGAACAATCTTTCTTTCCTGGAAGAAAAGATTCATCAGCTGCAGGATCTAGTACATTTGATTGTTGGTCAGAAAGGCCAATTGTTTGAACAACCCGATGAACTTGTAACTCAGGAACAACAGCTTGTCACAGCTGATCTAACATCAATTATTGTTCAATTGATCTCTACCGCAGGTAGTCTTCTTCCTTCTGTCAGGCGTAATCTTACAAACACTAGCCCATCTGTTGGACAGCATGGCCAGATTCCTGGGATTGCTTTTCCTTCTGGATTAGACCCGAGTAGTAGTATGCAGCCACAAAATAATAGTGGAGATAAGATATCTGATCCATCCAACCAAATTGATGTAACCAATACTTGTGAAATGGAGCAAAACAACAATATGGAAGACCACGAGCTGAAAGATGAAGAGGATGTGGAAGAGGGTGAGAACCTTCCACCGGGTTCTTACGAGATTTTACAgttagaaaaagaagaaatccTTGCTCCTCATACGCATTTCTGCACGATATGCGGGAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACCCCAGAAGCACTTGCGAAACCTAATAAAGAATCTGTGTCTGAACCGAAGCTCATCAAGAGCAGATGCAACACAAAGAAATTCTCAGTCATGGCAGATCTTAAAACTCATGAAAAGCACTGTGGTAGGGATAAATGGCTTTGTTCGTGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGACACATTGCGCTGTTCCAAGGCCATACACCGGCAATACCCTCGGATGAATCCAAAGTACCGGCTGGAGTAGCTGATCCGGAAAGCAAGGAAAACAGTGATAAGGTAGGAAGTATAAACTTCAATTTTGGGTCAAATACTTCCATGGGAAATGGAGCTCAAAACATTTTGAATGTGAAAGGTATTGTTGATGATCCCATCACTTATCTCTCATCATTGAACTTTGAAACCTGTAACTATGGTGAATTTAATGAATTCCCTCGACCCCCATTTGAAGATTCAGAAGGTTCATTCCCTTTTCTCATGTCTGAATCGTTCAATTATGCTTCTAAATCTGGAGGAGAATCATGTTCTGACAAGCTGTAG 1467 0.4213 MDPKVSLCANTWTRPPSLVSRQNQMLENLSPDPTSFPDFGLLQNQQRWEDPSVSDFGIQVEAPFKDFNQGAGTQPSLLPCNSNSEIKIPNQEHCLLGDTTRTGKLQDWDPTVMLNNLSFLEEKIHQLQDLVHLIVGQKGQLFEQPDELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRRNLTNTSPSVGQHGQIPGIAFPSGLDPSSSMQPQNNSGDKISDPSNQIDVTNTCEMEQNNNMEDHELKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPKLIKSRCNTKKFSVMADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSDESKVPAGVADPESKENSDKVGSINFNFGSNTSMGNGAQNILNVKGIVDDPITYLSSLNFETCNYGEFNEFPRPPFEDSEGSFPFLMSESFNYASKSGGESCSDKL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2336 488 MobiDBLite consensus disorder prediction 383 402 - -
Sto8g2336 488 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 325 472 IPR044300 GO:0010044|GO:0010447
Sto8g2336 488 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 43 326 IPR044300 GO:0010044|GO:0010447
Sto8g2336 488 SUPERFAMILY beta-beta-alpha zinc fingers 278 303 IPR036236 -
Sto8g2336 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 306 IPR013087 -
Sto8g2336 488 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 325 472 - -
Sto8g2336 488 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 43 326 - -
Sto8g2336 488 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Sto8g2336 488 MobiDBLite consensus disorder prediction 204 226 - -
Sto8g2336 488 Gene3D Classic Zinc Finger 263 335 - -
Sto8g2336 488 SMART c2h2final6 279 301 IPR013087 -
Sto8g2336 488 MobiDBLite consensus disorder prediction 185 226 - -
Sto8g2336 488 Pfam Zinc finger, C2H2 type 280 301 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2336 Sto-Chr8 15723699 15725291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2336 246 486 C2H2 Transcription Factor Family AT1G34370 56.552 1.80e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g2336 zf-C2H2 0.00024 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2336 - - gmx:100500526 619.772