Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2318 CTGCTCGAAGATGAGAAGCTTAGCGTCTCGGTACTGAAGAGGAAAAAGCATGCGAGTGTACCAAATGACGCTCTAGAGGACGACGATCTGGACTATGGGGCTGCCGGAGAAGTCGCCGTACATGGCCTTGAGGAGGGGGATGCACATGACGATGGTGTTGGGGTGGGTGGAGAGGGAGAAGAACGTGATGCTCCAGTCCAGGCTGTCGTGTTTGGTGAAGAGAGCGGCGAGGATGACCACTTTCTGGAAGGAATCAGCGACTATGAAGCAATTCATGTCGTAAGGGTCATTGGAGAAGATGAAGTTGAAGGAGAGGAGAGGGATGCCCAATCATCACAACTAAAACCCACAGTAGATATGGCAAAAGTAGATGAATTTTCTTCAGGTTTAGAGATGATTCGCGAACATCTCTTTGGTGACTTTTCCTCTACAGAATCCTTCCTAGCCAATCTCTATCCCGTGAAAGAAGAGGACCAATTATTCTCAGATTTTGATTTCAGCTCATGCATGTTTCCTTTTCTTGAAACCACTGAGCTTGAAGAAGCACTAGATATGGAGGTCCTAGACTGCATCTCCAAGGAAACGACGACGTCTCAGGAGGAGGAGACCGATTATGATAATGCTAATAATAAGCCCACATCGGCCAGGGAGGCAGAGCGACGCGGCGAAGAGGTCAATATAAGGCGGTACAGAGGAGTGCGAAGACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGTGACCCGAGCAGGAAAGGGACACGTGTGTGGCTGGGGACGTTTGATAGCGAGATAGATGCAGCGAAGGCGTACGATTGTGCGGCGTTCAGGATGAGGGGCCAAAAGGCAATATTGAATTTTCCATTGGAGGCAGGGAATCAGTGTGATCCAAAGCCTAATCGATGTGGAAGGAAGAGGGCCAGACATAGTAATTATAGCATTGAGGCATCATCACAGCCTTTGCTTACGGAAAAAGCTTAA 978 0.4959 LLEDEKLSVSVLKRKKHASVPNDALEDDDLDYGAAGEVAVHGLEEGDAHDDGVGVGGEGEERDAPVQAVVFGEESGEDDHFLEGISDYEAIHVVRVIGEDEVEGEERDAQSSQLKPTVDMAKVDEFSSGLEMIREHLFGDFSSTESFLANLYPVKEEDQLFSDFDFSSCMFPFLETTELEEALDMEVLDCISKETTTSQEEETDYDNANNKPTSAREAERRGEEVNIRRYRGVRRRPWGKFAAEIRDPSRKGTRVWLGTFDSEIDAAKAYDCAAFRMRGQKAILNFPLEAGNQCDPKPNRCGRKRARHSNYSIEASSQPLLTEKA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2318 325 MobiDBLite consensus disorder prediction 299 325 - -
Sto8g2318 325 PANTHER DNA-BINDING DOMAIN 194 313 IPR044808 GO:0003700|GO:0009873
Sto8g2318 325 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Sto8g2318 325 PRINTS Ethylene responsive element binding protein signature 269 289 IPR001471 GO:0003700|GO:0006355
Sto8g2318 325 MobiDBLite consensus disorder prediction 195 223 - -
Sto8g2318 325 MobiDBLite consensus disorder prediction 311 325 - -
Sto8g2318 325 Pfam AP2 domain 229 279 IPR001471 GO:0003700|GO:0006355
Sto8g2318 325 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 194 313 - -
Sto8g2318 325 SUPERFAMILY DNA-binding domain 229 288 IPR016177 GO:0003677
Sto8g2318 325 SMART rav1_2 229 293 IPR001471 GO:0003700|GO:0006355
Sto8g2318 325 Gene3D AP2/ERF domain 228 289 IPR036955 GO:0003700|GO:0006355
Sto8g2318 325 CDD AP2 237 287 IPR001471 GO:0003700|GO:0006355
Sto8g2318 325 ProSiteProfiles AP2/ERF domain profile. 229 287 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2318 Sto-Chr8 15590703 15592003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2318 120 307 AP2-EREBP Transcription Factor Family AT5G07580 42.786 2.40e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g2318 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2318 - - ccaj:109813158 189.119