Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2251 ATGTGCCTCACCACCCGCTCCATACCCATACCCATGGGCCTCACCCGCCAGTCCCTTTTGCATAACAATCTTAGCACCCTTCAACGCATCGAAGAACCACGCCTCCGTCTTGGGATGCCGAATCGCGGGCTTCCCCTTCCCCGGggccaagcccaagcccaagcccggAGTGGCGGCACAGGGGAAGAGGAAGACTCTGATGCGGGAAGGCGTGGGAGCCGAGGAGAGGCGGTCGTGCTCGTCGACGAGGATTTGGAAATCGTCATCGGAGGTGAGGGAAATGAGAGAGTCGAGGTCGAGATGAGGGAGCTGGTActtgagagtgaaggagaagttGAGGGAGAGTGTGAGGGAGAGATGAGAGAGGAGGGAGTCGAGAGTGGTGACGGCGCGGCGGTCGACGGAGACGATGCGCGTGTCGCCGCCGGCGTAGCGGAGAGAGTTGGAGCGAGGGCGAGGGACGATGTGGCCGCCAATatggatggaagaagaaggCTAATCGTGAAACGTATCGAAGACAAAAAAGTCCGTAAGGCCACATtcgagaggaggaagaaaggttTGCTGAAGAAAGCTTCAGAAATCTCCACACTGTGTGGAGTCAAAGCGTGCGTGATCGTCTTCCCTCCTGACGAGTTAGGCGAAGCGCACGCCCAATCATGGCCTCCGGATCCCAAGGACGTAATGGGAATTATCCAAAAGTACGAGAACGACAAGTCGTCGCGGAACAAGCCTCGGACCGTCAAGAACTACGACCTCCGCGAGTTCTTCAACGACAGGAAGAAGCAGGTCGTTTCGGAGACTTCGAAGGTTCGACGGCAGAGGCTGGACATGTCGTTTCCAACGTGGGATTGCCGTTTCGACAACCTCGGAGAGGATCAGCTTGGGATGCTTGTTTCGGCGTTGGATTCCAAGAATATTGGTAATTTTGAggattatttttctttggttaATTATGGGTCTAATGGGAACATGGAGACCACGATGCCATTATCAACATCACTCATGGGTCAAAGTTCTTCATCGGTTGCTTTTGAGGATTTCAAGATTATTCTTACTTCACTGATGACTCTGGATTGA 1080 0.4926 MCLTTRSIPIPMGLTRQSLLHNNLSTLQRIEEPRLRLGMPNRGLPLPRGQAQAQARSGGTGEEEDSDAGRRGSRGEAVVLVDEDLEIVIGGEGNERVEVEMRELVLESEGEVEGECEGEMREEGVESGDGAAVDGDDARVAAGVAERVGARARDDVAANMDGRRRLIVKRIEDKKVRKATFERRKKGLLKKASEISTLCGVKACVIVFPPDELGEAHAQSWPPDPKDVMGIIQKYENDKSSRNKPRTVKNYDLREFFNDRKKQVVSETSKVRRQRLDMSFPTWDCRFDNLGEDQLGMLVSALDSKNIGNFEDYFSLVNYGSNGNMETTMPLSTSLMGQSSSSVAFEDFKIILTSLMTLD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2251 359 ProSiteProfiles MADS-box domain profile. 161 208 IPR002100 GO:0003677|GO:0046983
Sto8g2251 359 SUPERFAMILY SRF-like 162 240 IPR036879 GO:0003677|GO:0046983
Sto8g2251 359 MobiDBLite consensus disorder prediction 60 75 - -
Sto8g2251 359 Gene3D - 173 262 IPR036879 GO:0003677|GO:0046983
Sto8g2251 359 PANTHER MADS BOX PROTEIN 164 305 - -
Sto8g2251 359 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 170 211 IPR002100 GO:0003677|GO:0046983
Sto8g2251 359 PRINTS MADS domain signature 163 183 IPR002100 GO:0003677|GO:0046983
Sto8g2251 359 PRINTS MADS domain signature 183 198 IPR002100 GO:0003677|GO:0046983
Sto8g2251 359 PRINTS MADS domain signature 198 219 IPR002100 GO:0003677|GO:0046983
Sto8g2251 359 CDD MADS_SRF_like 162 247 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2251 359 MobiDBLite consensus disorder prediction 37 75 - -
Sto8g2251 359 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 164 305 - -
Sto8g2251 359 SMART madsneu2 161 220 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2251 Sto-Chr8 14961009 14964814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2251 162 305 Type I MADS-box Gene Family AT5G55690 33.333 1.24e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2251 SRF-TF 4.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2251 - - lang:109350953 139.428