Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2250 ATGGATACGGACTTGCTGCTGGCGACTAAGCCACAACCATACTCAGCCACAAAGTGGTACGTACCGGGAATTAGCCGCGGCCGGAGGGGACGTACCGGCAAAATCACCGGCGGTAGAAAGTCGTCGTCGGCGAATAAGAAGGTGATATGGTTGGGAGGGAGGCCACGTAGGGTTTGGAGGATGAAAGGAATTAGCACTAAGCTTCGTTTGATGGTTAGGGCACCATTGAAGGTATTGAGGAAACTTAAGAATGGTTATGTTGATTTTATGGTGAGATTGGCTGGAAATGTTGGGTCTTTGAATAGTGAGAAAGTGTTTGGAGGAAGACGAATTCCAAAGGCTCGTCAAGTAGGGTCTAAGGGTAATTATTCTTCTGGTGATGCATTTGAGGCTAGGCTTATTTATGAGATCTCTAAAATCCTCGTTTCTTCTAATGAATTACATCCcatATATCTTGTACTAGAAgtaactttaattaatttatttgaaatgcTATCAGATACTCAATATCATGCAAGCCAAAACGTTTTGGGGGATTTTGGAAGCACTGAGAACTTCAACCAGCAGCCATTAACAGATTTCAGCAACATCATCAATCAACCTCCTTTCCAACAGGTTCCGGAATTCATGACAATTCCACCTTATATGCTTGCTCAGTATCGTCAAGAAGAGGATAAGAACAAAGCATTAGAAATGTTTTGGAAACAACAAATGTATGAGATACAGAATGCTGAagCAATTAGGGGCCAAAATCAATTGCCTCTGGCTCGAATCAAGAGAATAATGAAGTCTGATTCCGATGTCAAGATGGTCAGTGCGGAAACTCCAATATTATTATCAAAAGCATGTGAGATGTTCATTCAAGAAATGAGCCTCCGTGCTTGGATGCGGACTGAAGAGAACAAGAGACGTACTATTCAACGTCATGACGTTGCTGAATCTATTCATGACACTAAACTGTATGACTTCTTAACTGATGTTATTCCATTGCAATACCAAGGTGGCCATCCATCTCTCGTGCCTCCACCTCAACCTCAGGAAGAGCAATCTGGACAAGCTGCAGAAAATCCTAATTATGCTGCTCCAATTGTTGATGAGAGTTTGATGAATATGGGGATTAATGTGACTGATCAGCAAGCTGAAAGTAGCCAGCAATATACTGAAGCCTTCACCATGGATCCATCCATTGCGCCGCCTCATCCTCAGTTTCCCTACAATTTCCCTCCCCCAAATTAA 1236 0.4191 MDTDLLLATKPQPYSATKWYVPGISRGRRGRTGKITGGRKSSSANKKVIWLGGRPRRVWRMKGISTKLRLMVRAPLKVLRKLKNGYVDFMVRLAGNVGSLNSEKVFGGRRIPKARQVGSKGNYSSGDAFEARLIYEISKILVSSNELHPIYLVLEVTLINLFEMLSDTQYHASQNVLGDFGSTENFNQQPLTDFSNIINQPPFQQVPEFMTIPPYMLAQYRQEEDKNKALEMFWKQQMYEIQNAEAIRGQNQLPLARIKRIMKSDSDVKMVSAETPILLSKACEMFIQEMSLRAWMRTEENKRRTIQRHDVAESIHDTKLYDFLTDVIPLQYQGGHPSLVPPPQPQEEQSGQAAENPNYAAPIVDESLMNMGINVTDQQAESSQQYTEAFTMDPSIAPPHPQFPYNFPPPN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2250 411 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 252 312 IPR003958 -
Sto8g2250 411 SUPERFAMILY Histone-fold 206 324 IPR009072 GO:0046982
Sto8g2250 411 MobiDBLite consensus disorder prediction 397 411 - -
Sto8g2250 411 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 208 386 IPR027170 GO:0003700|GO:0006355|GO:0016602
Sto8g2250 411 Gene3D Histone, subunit A 214 329 IPR009072 GO:0046982
Sto8g2250 411 MobiDBLite consensus disorder prediction 334 355 - -
Sto8g2250 411 MobiDBLite consensus disorder prediction 392 411 - -
Sto8g2250 411 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 208 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2250 Sto-Chr8 14951368 14958740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2250 230 367 CCAAT-HAP5 Transcription Factor Family AT1G56170 47.297 5.35e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g2250 CBFD_NFYB_HMF 1.2e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2250 K08066 - mnt:21409721 150.599