Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2235 ATGGATAGGTGGGATTCAGGCACCAATGTTGGTGAATTTGATGGCCACTCAAGGCGAGTTTTAAGTTGTGCTTATAAGCCGACAAGACCCTATCGTGTTGTCACATGTGGAGAGGATTTTCTGGTGAACTTTTATGAAGGGCCACCATTCAGATTTAAGCTATCTCACAGGGATCATTCAAATTTTGTCAATTGTGTAAGATATTCTCCAGATGGAAGTAAATTTTTGAGTGTAAGCTCTGACAAAAAAGGTATTATATATGATGGAAAGAGTGGAGAGAAGATTGGAGAACTATCTTCTGAGGGTGCCCATACCGGCAGTATCTATGCTTTTAGCTGGAGTCCTGATGGAAAACAAGTTCTTACTGTATCTGCAGACAAGTCAGCAAAAGTGTGGGACATATCTGAGGACAATATtggaaaagtgaagaaaacattGACTTCTCCTGGCTCAGGTGGAATTGAAGACATGCTAGTTGGGGGTCTATGGCTAAATGATCATCTTGTTACCGTTTCTCTTGGTGGGGTAATATCTATATTTTTAGCAAGTGATCTTGATAAAGCCCCTACAACATTATCCGGACATATGAAAAATGTATCCGCCTTGACTAGTCTTAGAAGCAACCCTAGAGTGCTTTTGTCTAGCAGTTATGATGGTTTAATATTTAAGTGGGTTCAAGGGGTTGGATATAGTGGTAAATTACAAAGAAAGGAGAATTCTCAAATCAAATTCTTAGCAGCTTCAGAAGAAGAGATTGTTACATCTGGATTCGATAATAAGATATGGAGAGCTTCTTTACATGGGGATGGTTGTGGAGAGGCTGAAGCCATTGATATAGGAAGTCAACCAAAGGACTTGAGTGTTGCACTTCTATCTCCTGAACTTGCTCTGGTTTCAATTGATTCAGGAGTTGTCATGTTACGTGGTACAAAAATTGTGTCAACCATTGATCTTGGGTTTGTTGTGACAGCATCTGCCGTCTCACCTGATGGAAGTGAAGCTATTATTGGTGGACAGGATGGTAAACtgcatatatattgtatttctgGTGATACTCTTACAGAAGAAGCAGTCCTTGAGAAACATCGAGGTGCTATTAGTGTCATAAGGTACTCTCCAGATGTTTCCATGTTTGCATCAGGGGATGTCAATCGAGAAGCAATAGTGTGGGACCGAGCCTCAAGAGAGGTGAAGCTTAAGAACATGTTATATCACACTGCTCGTATAAACTGCCTTGCTTGGTCCCCTGATAGTAGTAGGATTGCTACTGGATCACTCGACACATGTGTcattatatatgaaattgaCCAGCCAGCATCTAATAGAATTACCATAAAGGGTGCTCACTTAggaggggtttatggtttggttttcactgatgagtataACTTGGTGAGCTCAGGTGAGGATGCTTTCATTCGACTTTGGAAGTTAACCCCTCAATGA 1446 0.3873 MDRWDSGTNVGEFDGHSRRVLSCAYKPTRPYRVVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFLSVSSDKKGIIYDGKSGEKIGELSSEGAHTGSIYAFSWSPDGKQVLTVSADKSAKVWDISEDNIGKVKKTLTSPGSGGIEDMLVGGLWLNDHLVTVSLGGVISIFLASDLDKAPTTLSGHMKNVSALTSLRSNPRVLLSSSYDGLIFKWVQGVGYSGKLQRKENSQIKFLAASEEEIVTSGFDNKIWRASLHGDGCGEAEAIDIGSQPKDLSVALLSPELALVSIDSGVVMLRGTKIVSTIDLGFVVTASAVSPDGSEAIIGGQDGKLHIYCISGDTLTEEAVLEKHRGAISVIRYSPDVSMFASGDVNREAIVWDRASREVKLKNMLYHTARINCLAWSPDSSRIATGSLDTCVIIYEIDQPASNRITIKGAHLGGVYGLVFTDEYNLVSSGEDAFIRLWKLTPQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2235 481 Gene3D - 188 479 IPR015943 GO:0005515
Sto8g2235 481 ProSitePatterns Trp-Asp (WD) repeats signature. 120 134 IPR019775 -
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 446 481 - -
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 481 IPR001680 GO:0005515
Sto8g2235 481 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 4 481 - -
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 142 IPR001680 GO:0005515
Sto8g2235 481 Gene3D - 1 187 IPR015943 GO:0005515
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 391 - -
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 135 - -
Sto8g2235 481 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 478 IPR011047 -
Sto8g2235 481 SMART WD40_4 438 477 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 6 46 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 309 347 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 91 133 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 49 88 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 185 225 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 352 391 IPR001680 GO:0005515
Sto8g2235 481 SMART WD40_4 396 434 IPR001680 GO:0005515
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 391 IPR001680 GO:0005515
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Sto8g2235 481 PANTHER ACTIN-INTERACTING PROTEIN 1-1 4 481 - -
Sto8g2235 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 436 - -
Sto8g2235 481 Pfam WD domain, G-beta repeat 405 433 IPR001680 GO:0005515
Sto8g2235 481 Pfam WD domain, G-beta repeat 57 83 IPR001680 GO:0005515
Sto8g2235 481 Pfam WD domain, G-beta repeat 447 477 IPR001680 GO:0005515
Sto8g2235 481 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2235 Sto-Chr8 14810893 14814693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2235 57 381 Eukaryotic Initiation Factors Gene Family AT2G46290 23.209 6.62e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2235 8 14810893 14814693 Sto8g2235 8 14810893 14814693 ECH