Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2226 ATGCTCCATGGGTGGAATGATTCCTACCTATTGGTCATTGATGCTGGTAAGTCTACAACTGGAGGTCAGATACTTTTCCTTAGTGGTCAGGTTGATGAACGTACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGTTGGTACATGGCTTATATAATGGACACAAATGAAGAGGAGAGGGTAAAGGGCAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGATACATcaaggtttacaattttggatgCTCCTGGTCACAAAAGCTATGTCCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTTTTGGTAATTTCTGCTCGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACCCGTGAACATGTCCAGCTTGCAAAAACACTGGGTGTCGCAAAGCTTCTGGTTGTCGTTAATAAGATGGATGAGCCTACGGTGCAGTGGTCAAAAGAAAGGTATAATGAAATTGAGTCAAAGATGGTACCATTTCTGAAAGCGTCAGGCTACAATGTTAAGAAAGATGTCCTATTCTTACCAATATCTGGGCTAACTGGTGCAAACTTAAAGACAAGAGTTGATAAAAGCATTTGTCAATGGTGGGATGGTCCCTGCCTATTTGAAGCACTTGATGCTGTTGAAGTTCCTCCTCGAGATCCCAATGGTCCTTTCAGGAACCTTAAAATTCCGAGCAATTTTTTCCCGCCTAGTATGCTAAACATAACAGTGAAGTCAAAGGCGCTCTTAGGCGCTGAGGCGAGGCGGAATTTCAGTCCAGCGCCTCTTGAGGTTCAAGAGCTGTATATTCTGATTTTAGAAGAGTCGTATAGCATTTATTGCTTCTACATTCTTGCATCATATGCTAATATTAGGATGCCTATACTTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAATCTGGTAGTGTTCGTGAGGGGGATTCTTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTATTGGTATAatcatagaagaagataaggtCAAATGTGCTGGACCTGGTGAAAATTTGCGGATTAGAATATCTGGCGTTGAAGAAGAAGACATATTATCTGGGTTTGTTCTGTCTAGTGttgCAAATCCAATACCAGCTGTTACTGAGTTTATTGCTCAACTGCAGATCCTTGAATTGCTGGACAATGCTATTTTTACTGCTGGGTACAAAGCTGTTCTGCACATCCACTCTATAGTTGAAGAATGTGAGATTGTTGAACTCCTACAGCAAATTGATCCAAAGACAAAGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGAGTTCAGGTTAATAATACAATATGCATTGAAAAGTTTGCCGATTTCCCACAACTTGGTAGGTTCACTCTTCGCACAGAAGGAAAAACTGTTGCAGTGGGAAAAGTCActggtttttaa 1485 0.3933 MLHGWNDSYLLVIDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYNEIESKMVPFLKASGYNVKKDVLFLPISGLTGANLKTRVDKSICQWWDGPCLFEALDAVEVPPRDPNGPFRNLKIPSNFFPPSMLNITVKSKALLGAEARRNFSPAPLEVQELYILILEESYSIYCFYILASYANIRMPILDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVIGIIIEEDKVKCAGPGENLRIRISGVEEEDILSGFVLSSVANPIPAVTEFIAQLQILELLDNAIFTAGYKAVLHIHSIVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVVCRVQVNNTICIEKFADFPQLGRFTLRTEGKTVAVGKVTGF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2226 494 PRINTS GTP-binding elongation factor signature 6 19 IPR000795 GO:0003924|GO:0005525
Sto8g2226 494 PRINTS GTP-binding elongation factor signature 85 95 IPR000795 GO:0003924|GO:0005525
Sto8g2226 494 PRINTS GTP-binding elongation factor signature 101 112 IPR000795 GO:0003924|GO:0005525
Sto8g2226 494 PRINTS GTP-binding elongation factor signature 145 154 IPR000795 GO:0003924|GO:0005525
Sto8g2226 494 Pfam Elongation factor Tu GTP binding domain 13 206 IPR000795 GO:0003924|GO:0005525
Sto8g2226 494 CDD eRF3_C_III 386 492 - -
Sto8g2226 494 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Sto8g2226 494 Gene3D Translation factors 387 494 - -
Sto8g2226 494 PANTHER TRANSLATION FACTOR 13 235 - -
Sto8g2226 494 PANTHER TRANSLATION FACTOR 301 488 - -
Sto8g2226 494 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 389 493 IPR009001 -
Sto8g2226 494 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 2 228 IPR000795 GO:0003924|GO:0005525
Sto8g2226 494 CDD EF1_alpha 13 227 - -
Sto8g2226 494 Gene3D - 12 226 IPR027417 -
Sto8g2226 494 Pfam Elongation factor Tu C-terminal domain 385 492 IPR004160 -
Sto8g2226 494 Pfam Elongation factor Tu domain 2 312 378 IPR004161 GO:0005525
Sto8g2226 494 CDD eRF3_II 300 380 - -
Sto8g2226 494 Gene3D Translation factors 298 382 - -
Sto8g2226 494 PANTHER BNAA06G12300D PROTEIN 13 235 - -
Sto8g2226 494 PANTHER BNAA06G12300D PROTEIN 301 488 - -
Sto8g2226 494 SUPERFAMILY Translation proteins 299 384 IPR009000 -
Sto8g2226 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2226 Sto-Chr8 14726604 14734651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2226 409 489 Eukaryotic Initiation Factors Gene Family AT1G07930 34.568 7.48e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2226 K03267 - smo:SELMODRAFT_115313 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2226 8 14726604 14734651 Sto8g2226 8 14726604 14734651 ECH