Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2223 ATGTCAGACGTCGATCCATCTAAGAAGGTAGCCGATAGATATCTCAGACGTGAAGTCCTCGGTGAAGGTACCTATGGAGTCGTATACAAAGCCATTGATACTAAGACAGGACAGACAGttgcaattaaaaaaattcgGCTTGGCAAGCAGAAGGAAGGGGTTAATTTTACAGCTCTTAGAGAGATTAAACTGCTTAAAGAGCTCAAAGATCCCAACATTATTGAGTTAACTGATGCATTCCCTCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTTATACGAGATCggaatatttttctttcacctGCCGATATAAAATCTTATCTTCAAATGACACTTAAAGGTCTTGCAATTTGCCACAAGAAATGGGTTTTGCACAGGGATATGAAGCCGAATAACTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCAAGGATATTTGGGAGCCCTGAGCGAAGGTTTACTCATCAGGTGTTCGCTCGGTGGTATAGAGCACCCGAACTATTATTTGGGACCAAACAATATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTGCTTCGTCGGCCCTTCTTgcagGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGTACTCCAACAACTTCTCAGTGGCCTGATATAGTATACCTTCCTGATTATGTTGAATACCAATATGTTCCAGCTCCCCCTTTGCGTTCTTTATTCCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACATATGATCCAAAAGTTAGAATTTCAGTGCAGCAAGCATTGGAGCACAGGTATTTTTCCTCTGTGCCTCTGCCCACAGATCCAGAAAAGCTCCCTAGACCTGCCCCTAAGAAGGAACCTAAGGTTCCTGATTTCAATCCACATGAGGGCCCTACTGTGTTATCACCTCCAAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGgatttgaaggaattgcattgCAAGGAGATAAAGATGATAACAATGTTGGTGATAATACTGGGAAGAATGATCCAGCATCAACGTCAATAGATTTTTCTATATTTGGATTACAACCTCCAAATAGACCTACTATTAACAGTGCTGACAGATCACatctaaaaagaaaattagaccTAGAATTCCAGCAGCCAGAATAA 1227 0.3896 MSDVDPSKKVADRYLRREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELTDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAICHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPERRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTTSQWPDIVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKVRISVQQALEHRYFSSVPLPTDPEKLPRPAPKKEPKVPDFNPHEGPTVLSPPRKSRRVMPGRDGFEGIALQGDKDDNNVGDNTGKNDPASTSIDFSIFGLQPPNRPTINSADRSHLKRKLDLEFQQPE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2223 408 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Sto8g2223 408 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Sto8g2223 408 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2223 408 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2223 408 MobiDBLite consensus disorder prediction 391 408 - -
Sto8g2223 408 MobiDBLite consensus disorder prediction 306 320 - -
Sto8g2223 408 MobiDBLite consensus disorder prediction 362 390 - -
Sto8g2223 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Sto8g2223 408 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Sto8g2223 408 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Sto8g2223 408 MobiDBLite consensus disorder prediction 296 408 - -
Sto8g2223 408 SUPERFAMILY Protein kinase-like (PK-like) 10 302 IPR011009 -
Sto8g2223 408 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Sto8g2223 408 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Sto8g2223 408 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2223 Sto-Chr8 14710221 14714391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2223 8 405 Core Cell Cycle Gene Families AT1G18040 76.382 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Sto8g2223 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2223 K02202 - gmx:100776618 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2223 8 14710221 14714391 Sto8g2223 8 14710221 14714391 ECH