Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2196 ATGCCTGTGGTTTCTGAGGTCTCTGCAGGAAACATGAAATGTAGTAGAAGACCTAGAAATCAATTTGGGCATCCTAATCATCATTCAATTCCAGAACCAGATCCCAACCCTCCAATCCCTTCCTCTATAATCCAGTCCACTCGCTGCAAATCCACCATTTCCTCCCTCCTCCTCTCCACTTTCTCCAACAACAACGCCTCCGGTGAGGCTGCACACCGCGGCGGCCGTCACAAGAAGAAGAACAATTTCTCCGCCGCGAGCTTTAGGGGACTCGGATGCACCGCCGGTGCGTCGCAGCAGGTGTCGGTTCCGGCGGTGATTCGGACGTCGGCGGATTGGCAAGGGAAGAAGGCGAGAAAGAAGAAGCACAAGAGGAGTAGTGGCAATGGCAAGAAGACCACCACCACCTGTACAGGCGTTCTTGATGATGATGGCGGTGGTCCCACTCACGCCTCTGGTTCTACTCCAACGAATCGTGTTGATTTTCAAGACGTGTGGTGTGGCCCTGGAATCGGATTCTCCGCGGATGCCGTTGCTGCGTCTGTGGATTGCGTTGTGGCGAGGAGGAATGCGTCTTCCAGAGGCAAAATTGATGTGGAGAGGATGAATCACAGAGAGCGTCTATCTTACCTAGGAAGGCGAGCTATGAACCCAGAAACCATATCCTTTATGGACAGTGATCCGGACATCTTCCAAACACGTCCTCCTGCTTCTGACACTTTTGGAAGTGCAAGATTCTATCGTCACGTTCGACATCCTTCCTCCGAAGGTTTTGCTGAGGACTGTAGGAGTGGCTTTATGGACTACTCTGGACTACCACTTACTGAAGAACTTAGGGCAAGTAGagaatttcttttcaaaaaagaGATAATGATGCTCCATGGTGGTCTGCTAATGGGTGGAATATTAGATCCACATGACCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAACTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAGCACTGGACTTAAAGAAGACGAGATAGGACGCCACATACGGAAGATTCAGCTTCCATTCCTAAACGAAGCACTGAAGCATCACATTAACAAAAAGTGCAGCATTTGTCAGGAGGAATATGAAGGAGATGATGAAGTGGGGAAGCTAAACTGTGAACACAGCTATCACGTTCAGTGTATCAGACAATGGCTTGCACAGAAGAACTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGAAGAAAGATCCACTCCTATCCCGTAAACCACCCTTGTGGAAGGCTGTTGATAACTGCAAGAGAAGCTTTGAAGCTTTTGTTCCATCATGTCTTGAGCTGAAATCTGAGAATTCAGCCAGGATAAAACATAAGGAGGATAATTTGCAAGAGGATAAGCAGTCGCAATCAATGGCCCGACAGGAATAA 1422 0.4782 MPVVSEVSAGNMKCSRRPRNQFGHPNHHSIPEPDPNPPIPSSIIQSTRCKSTISSLLLSTFSNNNASGEAAHRGGRHKKKNNFSAASFRGLGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRSSGNGKKTTTTCTGVLDDDGGGPTHASGSTPTNRVDFQDVWCGPGIGFSADAVAASVDCVVARRNASSRGKIDVERMNHRERLSYLGRRAMNPETISFMDSDPDIFQTRPPASDTFGSARFYRHVRHPSSEGFAEDCRSGFMDYSGLPLTEELRASREFLFKKEIMMLHGGLLMGGILDPHDQFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEIGRHIRKIQLPFLNEALKHHINKKCSICQEEYEGDDEVGKLNCEHSYHVQCIRQWLAQKNFCPVCKQEVVKKDPLLSRKPPLWKAVDNCKRSFEAFVPSCLELKSENSARIKHKEDNLQEDKQSQSMARQE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2196 473 MobiDBLite consensus disorder prediction 115 129 - -
Sto8g2196 473 SUPERFAMILY RING/U-box 366 416 - -
Sto8g2196 473 MobiDBLite consensus disorder prediction 453 473 - -
Sto8g2196 473 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 10 260 - -
Sto8g2196 473 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 288 412 - -
Sto8g2196 473 MobiDBLite consensus disorder prediction 1 43 - -
Sto8g2196 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 416 IPR013083 -
Sto8g2196 473 SMART ring_2 367 407 IPR001841 -
Sto8g2196 473 MobiDBLite consensus disorder prediction 111 158 - -
Sto8g2196 473 Pfam Ring finger domain 366 408 IPR001841 -
Sto8g2196 473 ProSiteProfiles Zinc finger RING-type profile. 367 408 IPR001841 -
Sto8g2196 473 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 288 412 IPR045191 GO:0061630
Sto8g2196 473 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 10 260 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2196 Sto-Chr8 14506902 14514263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2196 78 322 C3H Transcription Factor Family AT1G73760 40.698 3.26e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2196 - - gmx:100788837 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2196 8 14506902 14514263 Sto8g2196 8 14506902 14514263 ECH