Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2180 ATGGAAGCACATATATTCTTCTTCCGTACTTCTACCATCCTCACAATCTCCATCTTCCTCATCATTTCTCTCCCAAAATCCTACTCTCAAGACCATGACGACGGGTACCACGAGTGCGGCCGCCCATACAACTGTGGAGCAATACAAATGGCGAACGGCGCATATCCTTTCTGGACAGATGATCGACCTCGCTATTGTGGCAGCACCGACGGATTGAAGCTCAATTGCTCAGAAAATCATTCTGTTTCCTTTGAGGTGGGGACTCAGATTTTCAATGTCACACAGATTAACCAAGAACATCACATTTTGACTGTGGTCCGAGCAGATGTTGATTATGATAATTGTTCTTCCGATTTAACCAACGTATCATTTAGTCTCACTTCCCAAATCAATCTCTCCATTTTTGGGAGCGTGAAGAATGTGACCCTATTCTACGACTGCCCCTCATCCATTTCGGGGCTTAACAAGTTCCCCTGTAAAGCCCCGTCGAATAGTAATATTTACTATGCGTTCGAAAACGACGCCGAATATGGTGTTCTTCGAAGCCAGTGCGGGCGACTCATTCAAGTGCCCATTTCTTCAGATGGTATTGATCTGAATATTGCTCAAGATGGTATTGTTGTGCTGAATCGTGGATTTGATGTGACGTATATGAGTGTAGACGAGTCTCCCTGCTTAAACTGCGCTTATAGCCGAGGAATTTGTGGGAGTGGGATCGATAATTCGTCTCAATTCACCTGTTTTTGCGAGGACGGACCTCAAAATTCAGaatgtcatcatcatcataGTACTATCGCTGTCAGGAACAAAGTCATAGTAGGTATCACGGTAGGAGTAGTTGTAGCCACACTTATATTTTGCTGCATGAAATTCAAATCCTTAATACGGAAAATAGAACTTTGGAAGACAACTAAGCCCCACCAAGAAATTGAGGCATTCATAAGAAATCATGGATCTTTGGCTCTCACAAGATACAAATTCTCAGATGTGAAGAAGATGACGAAATCCTTCAAAGTTAAACTGGGAGAAGGTGGTTATGGTGCTGTATATAAAGGAGAATTACTCAACGGCTCTCATGTGGCGGTTAAGATATTGACTGCATCCAAAGGGAATGGTCAAGACTTTATCAATGAGGTTGCTAGCATCAGTAGAACTTCCCATGTCAATGTTGTTAGCCTTCTTGGGTTCTGTTTGGAAGGCCAAAACAAGGCCCTTATCTATGAATTTATGCCTAATGGATCCCTTGACAGATTTATTGACAACAAGGTAAATGAATCTACTCCATTATCTTTAACTCTGGAAAATTTGTATGAAATTGCGATTGGGATAGCTCGAGGGCTTGAGTACTTGCACAGAGGATGCAAGACTCGGATTCTACATTTTGACATAAAGCCACATAACATTCTGTTGGATGAAAACTTTTGCCCCAAGATCTCAGATTTTGGACTTGCTAAGATTTGCCCTAGGAAAGAAAGCATTATTTCAATCTCAGAAGCAAGAGGAACTATAGGTTATGTGGCTCCAGAAATTTGGAATAGAAATTTCGGAGGTGTTTCTCACAAGTCTGATGTTTACAGCTATGGAATGATGTTACTAGACATAGTTGGGGAGCGAAAGAACATGAATGCTGAAGCTAGTTGTACAAGTGAGAAGTATTTTCCAGATTGGATTTACAGTAAACTTGAAGAGGGTAGTAGTTTGGTACCTAATGGGATGACCAGCATAGAGGAACATGACATTGCAAAGAGAATGATAGTGGTGGGTCTATGGTGCATTCAAGCTTTTCCAATTCATAGACCTACTATAAGTAGAGTGATCGAAATGTTAGAAGGAAGTTTAGATTCACTGGAAATTCCACCAAAGCCTGTCATGTCTTCCCCTACCAGAATAGAAGCAGAATTTTCCACTACCACCACATGTTAG 1923 0.4119 MEAHIFFFRTSTILTISIFLIISLPKSYSQDHDDGYHECGRPYNCGAIQMANGAYPFWTDDRPRYCGSTDGLKLNCSENHSVSFEVGTQIFNVTQINQEHHILTVVRADVDYDNCSSDLTNVSFSLTSQINLSIFGSVKNVTLFYDCPSSISGLNKFPCKAPSNSNIYYAFENDAEYGVLRSQCGRLIQVPISSDGIDLNIAQDGIVVLNRGFDVTYMSVDESPCLNCAYSRGICGSGIDNSSQFTCFCEDGPQNSECHHHHSTIAVRNKVIVGITVGVVVATLIFCCMKFKSLIRKIELWKTTKPHQEIEAFIRNHGSLALTRYKFSDVKKMTKSFKVKLGEGGYGAVYKGELLNGSHVAVKILTASKGNGQDFINEVASISRTSHVNVVSLLGFCLEGQNKALIYEFMPNGSLDRFIDNKVNESTPLSLTLENLYEIAIGIARGLEYLHRGCKTRILHFDIKPHNILLDENFCPKISDFGLAKICPRKESIISISEARGTIGYVAPEIWNRNFGGVSHKSDVYSYGMMLLDIVGERKNMNAEASCTSEKYFPDWIYSKLEEGSSLVPNGMTSIEEHDIAKRMIVVGLWCIQAFPIHRPTISRVIEMLEGSLDSLEIPPKPVMSSPTRIEAEFSTTTTC 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2180 640 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Sto8g2180 640 Pfam Wall-associated receptor kinase galacturonan-binding 41 106 IPR025287 GO:0030247
Sto8g2180 640 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 11 637 - -
Sto8g2180 640 SMART serkin_6 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2180 640 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 637 IPR045874 GO:0004672
Sto8g2180 640 Pfam Wall-associated receptor kinase C-terminal 168 252 IPR032872 -
Sto8g2180 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Sto8g2180 640 Pfam Protein tyrosine and serine/threonine kinase 337 609 IPR001245 GO:0004672|GO:0006468
Sto8g2180 640 SUPERFAMILY Protein kinase-like (PK-like) 321 610 IPR011009 -
Sto8g2180 640 ProSiteProfiles Protein kinase domain profile. 335 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2180 640 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Sto8g2180 640 Gene3D Phosphorylase Kinase; domain 1 299 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2180 Sto-Chr8 14362423 14365561 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2180 7 622 Receptor kinase-like Gene Family AT5G38260 39.365 5.99e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sto8g2180 PK_Tyr_Ser-Thr 9.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2180 - - gmx:100781427 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2180 8 14362423 14365561 Sto8g2180 8 14362423 14365561 ECH