Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2172 ATGGCGACGCCCTTAGCCGGTCTACAGCACTTGGATGGAGGTGCAGGAGTGGCGGTGCTgtccaattcggtgaaaaaggtCGATTCCTCTTCTTCTACATCCAATGGTGCCTTGAAGTGCTCCTCCAAAATGGAGTcgcctatttttattttcctgtTCTTCCACAAAGCGATTCGGAATGAGCTTGACGCCCTTCACCGATTAGCTATGGCATTTGCCACCGGAAACCGCTCTGATATTCACCCGCTCTTCGAACGCTATTCTTTCCTGAGATCAATTTACCGGCACCACTGCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTTGATATATGGGTGAAAAATGTAGCACAGACATATTCTCTTGAACACGAGGGTGAAAGTGATCTTTTTGATCACCTCTTTGAGCTGTTAAATTCTACTGTCCAGAATGATGAAAGTTTCCCAAGGGAGTTAGCGTCTTGCACAGGAGCTCTGCAGACATCAGTTAATCAACACATGGCTAAAGAAGAGGAGCAGGTGTTTCCACTGCTTATTGAGCAGTTCTCTCTCGAGGAACAGGCATCTTTGGTTTGGCAGTTTCTCTGCAGTATTCCAGTACATATGATGGCAGTATTTCTTCCATGGCTTTCAACATCTATATCACCTGAGGAATCTCAGGATTTGCGAAAGTTCTTAAGCAAGATAGTACCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCGGTTGGTTGGAAGGAAAAAGTGGTGCTATCACAGTTGAAAGTTCCGTGGATCAGTCTCAGGTTCAAGGTTGTCATCGCCCATTAACCCACCAGATTGAGAAAGTAAACTGTGCATGTGAGTCCACAACGACTGGAAAAAGGAAATATTCTGAATCTAGTTTAGATGTTTCTGATACGGCTGGAACACATCCAATAGATGAAATATTGCTATGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCGGTGGAGACCAGAAAGATACAGCTCTCTGGAGATTTTACTAATCTTTCAGCTTTTAATGAAAGATTGCAATTTATCGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCAGTAGATGGtcaattttctttcttccaGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAGGCTATTCAAGATGAAGGAGCAACATCTAATTCAGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACTATACAGAGGCATTTCCATAATGAAGAAGTTCAAGTTCTTCCACTTGCTCGAAAGCACTTTAGCTTCAAAAGGCAACGCGAACTTCTGTATCAAAGTTTGTGCATGATGCCTCTGAAATTGATTGAACGTGTCCTGTCATGGTTGGTAGGATCATTAACTGAAGATGAAGCAAAGATGTTTCTGAAAAACATGCGATTGGCAGCTCCTGCAACAGATTCTGCTCTAGTTACACTCTTCTGCGGTTGGGCTTGCAAGGCTCGTAACAAGGGTCAATGTTTGTCTTCAAGTGCATCAGGTTGCTGTTCTGCTCAAAGAGTTACTGATATTGAAGAAAATTTTGTCCAATCATCATGTTATTGTGCTTCTGCATTATCTGCTAGAGATTGGTCAGTACTAGTTGAACTAGGTGAGAACCAAAGACCAGTCAAACAAAACATATTGGAGTTGTGCAAGAATGGAGAAACCTTTGAAACTTCAGGGACTGAATGCATACAGAAACAATGTTGTAGTGCTCGGTCTTGTTGTGTGCCAGGTTTAGGTGTGAGAAGTAATAATCTGGGGCTAAGTTCTCTTTCTACTGCCAAGTCTTTACGGTCCTTATCATTCGGCTCTTCTGCCCCATCTCTGAATTCCAGCCTTTTCATATGGGAAACAGATAACTCATTTGATAACTCCACAGAAAGACCAATtgatactatttttaaattccaCAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTAGTGATGGTGACGAGACAATTCTTCGGCAGTTTACCGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCAGCGCTGGAATCCAAAGAGTCACTGCACAACGTGAGCCATTCATACACATTGGACCATAAGCAGGAAGAAAGATTATTTGAGGATATTTCCTGTGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGACTTGCAGATGACCAGTATGTCAAATGAAAGTAATATGGAAACTTGTGATGCCAATTTTAGACATAATATCAGAAAATTCAATGAGCTAGCAACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTGACCTTGGATCAGCATATTTTCAGGGAAGAGAGGGAACTTTGGCCTTTATTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACCAAGAATACTATGTTCAATGAATGGCTTAATGAGTGCTGGAAGGAAAGTCCAGCACCTATAACACAGGCAGAAACCTCAGAGCAAGCAGTTTCTCAAAGAGGTTATGAATATCAAGAAAGCTTGGAATTGAATGATCAGATGTTTAAGCCAGGTTGGAAagacatattccggatgaatcAGAATGAGCTTGAGTCAGAGATCCGAAAGGTTTATCGGGATTCTACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAGCAGAAATCACCTAAAGGTATAGCTGGGGACTCTTCTAACGGTGAAGAAATAGAAGGACGCACAGTGTCATTTCAGGACCAGGAGAAACAAGTATTTGGGTGTGAACACTataagagaaactgcaaacttCGAGCTGCATGTTGTGGCAAGTTGTTTACATGTAGATTTTGCCATGACAATAAAAGCAACATCAGAAATGATGTGTATGCAATGCCTGAATATACAGCCAGTTGGGCCCACATGCATAACACCTTCATGAATGTATATCACTGCCCATTTTGCAATTTATGCCGTGTGGGGAGAGGGCTTGGGATTGATTATTTTCATTGTATGAAATGCAACTGCTGCGTAGGGATTAAATCAACATCTCACAAGTGCCTGGAGAAAGGATTAGAAATGAATTGCCCAATTTGCTGCGACTTCTTATTCACATCAAGTGCTACAGTCAGAGCTCTACCATGTGGCCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAATCGTTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTCCCTGAAGAGTACCGAGACCGTTATCAGGACATACTGTGCAATGACTGTGATCAAAAGGGAAAGTCACGATTCCACTGGTTATATCACAAATGTGAATTTTGTGGGTCATACAATACCCGGGTGATCAAGTGCGAGGTATCAAATTCAAATCCCCAATGCTCTTAG 3645 0.4047 MATPLAGLQHLDGGAGVAVLSNSVKKVDSSSSTSNGALKCSSKMESPIFIFLFFHKAIRNELDALHRLAMAFATGNRSDIHPLFERYSFLRSIYRHHCNAEDEVIFPALDIWVKNVAQTYSLEHEGESDLFDHLFELLNSTVQNDESFPRELASCTGALQTSVNQHMAKEEEQVFPLLIEQFSLEEQASLVWQFLCSIPVHMMAVFLPWLSTSISPEESQDLRKFLSKIVPEEKLLQKVIFGWLEGKSGAITVESSVDQSQVQGCHRPLTHQIEKVNCACESTTTGKRKYSESSLDVSDTAGTHPIDEILLWHNAIKKELSEIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGQFSFFQEHAEEESQFNDFRCLIEAIQDEGATSNSEAEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLSWLVGSLTEDEAKMFLKNMRLAAPATDSALVTLFCGWACKARNKGQCLSSSASGCCSAQRVTDIEENFVQSSCYCASALSARDWSVLVELGENQRPVKQNILELCKNGETFETSGTECIQKQCCSARSCCVPGLGVRSNNLGLSSLSTAKSLRSLSFGSSAPSLNSSLFIWETDNSFDNSTERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYTLDHKQEERLFEDISCVLSELSVLHEDLQMTSMSNESNMETCDANFRHNIRKFNELATKLQGMCKSIRVTLDQHIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPAPITQAETSEQAVSQRGYEYQESLELNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKSPKGIAGDSSNGEEIEGRTVSFQDQEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNKSNIRNDVYAMPEYTASWAHMHNTFMNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCVGIKSTSHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDQKGKSRFHWLYHKCEFCGSYNTRVIKCEVSNSNPQCS 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2172 1214 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1031 1210 - -
Sto8g2172 1214 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 29 1031 - -
Sto8g2172 1214 SMART ring_2 1096 1137 IPR001841 -
Sto8g2172 1214 Pfam Hemerythrin HHE cation binding domain 651 811 IPR012312 -
Sto8g2172 1214 Pfam Hemerythrin HHE cation binding domain 304 438 IPR012312 -
Sto8g2172 1214 Pfam Hemerythrin HHE cation binding domain 50 178 IPR012312 -
Sto8g2172 1214 Gene3D nmb1532 protein domain like 644 885 - -
Sto8g2172 1214 Pfam Ring finger domain 1095 1137 IPR001841 -
Sto8g2172 1214 CDD Hr-like 653 810 - -
Sto8g2172 1214 CDD Hr-like 50 176 - -
Sto8g2172 1214 PANTHER CHY ZINC FINGER PROTEIN 1031 1210 - -
Sto8g2172 1214 PANTHER CHY ZINC FINGER PROTEIN 29 1031 - -
Sto8g2172 1214 Gene3D nmb1532 protein domain like 307 454 - -
Sto8g2172 1214 Gene3D nmb1532 protein domain like 43 196 - -
Sto8g2172 1214 CDD Hr-like 307 436 - -
Sto8g2172 1214 ProSiteProfiles Zinc finger RING-type profile. 1096 1138 IPR001841 -
Sto8g2172 1214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1092 1140 IPR013083 -
Sto8g2172 1214 Gene3D - 1167 1209 - -
Sto8g2172 1214 Pfam Zinc-ribbon 1143 1200 IPR039512 -
Sto8g2172 1214 ProSiteProfiles Zinc finger CHY-type profile. 988 1078 IPR008913 GO:0008270
Sto8g2172 1214 ProSiteProfiles Zinc finger CTCHY-type profile. 1032 1095 IPR017921 -
Sto8g2172 1214 CDD RING-H2_Pirh2 1095 1138 - -
Sto8g2172 1214 SUPERFAMILY Zinc hairpin stack 1035 1089 IPR037275 -
Sto8g2172 1214 SUPERFAMILY RING/U-box 1093 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2172 Sto-Chr8 14279314 14288066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2172 1 1214 C2H2 Transcription Factor Family AT3G18290 63.091 0.0 1569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2172 K16276 - gmx:100801725 1979.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2172 8 14279314 14288066 Sto8g2172 8 14279314 14288066 ECH