Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2166 ATGTCTACTTCAAAGAGCgagagtagtagtagtagtagtactaGTGAAGATGACAATGGAGTTAGAAGAGGACCTTGGACTCTTGAAGAGGACAATCTTCTAACTCAGAGCATCTCTAGCTATGGAGAAGGAAGATGGAATTTGCTGGCTAAACGTTCAGGATTGAAGAGAACTGGCAAGAGTTGCAGATTGAGATGGCTTAATTATCTGAAGCCAGATGTGAAGAGAGGGAATTTAACCCCTCAAGAACAGCTTGTGATCCTTGAACTCCATTCAAAGTGGGGAAACAGGTGGTCAAAGATTGCACAACATCTTCCAGGGAGGACAGACAATGAGATAAAGAACTACTGGAGAACAAGGATTCAGAAACAAGCAAGACACATGAAAATGGACACAAGCAGCACAGAGTTTGAAGAAATGGTTAGGAGATTTTGGATGCCAAGGTTGCTTCAGAAAGCAGCAGAAACACCATCTCCTCCTCATCCTCCTCCACCTGCCATCCCAATTCTAAACCAAACCTTTCTTAATCCTTTTTGTGTTCCTCAGTGTTCACAAATAGGGACACAAGCAGCACCGACAACAACACACAACATTATTCCATGGGAGGGAGATCAGGGAGCTTGTATGATGAACATAGAAGAAACAGTACAACACAGTTCATTCATGTCCTGTTTTGATCCCGAATCAGCCAATAATAGCAGTCAGTTTCATCATGGATTATATCATAACAGTGACTTCAGCTCCTATTATGACATCAAAACTTGCAATGTGGAAAGCAATTGGGTGAACAATGATGTTGCATGTAGCATGTGGGGCATGGATGATGAACTATGGCAGTTCAAATAA 846 0.409 MSTSKSESSSSSSTSEDDNGVRRGPWTLEEDNLLTQSISSYGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLVILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHMKMDTSSTEFEEMVRRFWMPRLLQKAAETPSPPHPPPPAIPILNQTFLNPFCVPQCSQIGTQAAPTTTHNIIPWEGDQGACMMNIEETVQHSSFMSCFDPESANNSSQFHHGLYHNSDFSSYYDIKTCNVESNWVNNDVACSMWGMDDELWQFK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2166 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Sto8g2166 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto8g2166 281 MobiDBLite consensus disorder prediction 1 20 - -
Sto8g2166 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Sto8g2166 281 SMART sant 22 72 IPR001005 -
Sto8g2166 281 SMART sant 75 123 IPR001005 -
Sto8g2166 281 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Sto8g2166 281 Gene3D - 23 75 - -
Sto8g2166 281 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Sto8g2166 281 Gene3D - 79 143 - -
Sto8g2166 281 MobiDBLite consensus disorder prediction 1 26 - -
Sto8g2166 281 CDD SANT 80 119 IPR001005 -
Sto8g2166 281 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 8 251 - -
Sto8g2166 281 CDD SANT 25 70 IPR001005 -
Sto8g2166 281 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Sto8g2166 281 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Sto8g2166 281 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2166 Sto-Chr8 14235281 14236800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2166 18 281 MYB Transcription Factor Family AT1G68320 44.746 2.91e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g2166 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2166 K09422 - gmx:778042 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2166 8 14235281 14236800 Sto8g2166 8 14235281 14236800 ECH