Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2157 ATGGAGGAAAATAATCTACCTCCTGGATTCAGATTCCACCCCACAGACGAAGAGCTCATATCCTATTATCTAAGAAGCAAAGTGTGTGATCCGTCTGCTTTCACATCCAAAGCTATTGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTcccagGAAAAGACAAGGAAATTTTTACTAGTGTTGCTGAAAGTGTGCCTATTTTGGTTGGAATGAAGAAAACCCTTGTCTTCTATAAGGGCAGAGCTCCAAGAGGTGAGAACACCAATTGGGTTATGCATGAATACAGGCTACACAATTACAACCATCTCTTCACTACTTCTAATAAGGAAGAATGGGTGGTTTGTAGGGTGTTCCATAAAAGCATATCAGCGGCAAGAAAAGCACAGGAGATCACATCATCTTCACACTTATCTCTTGAGTCATCACCAAATCATGGTGATACAGCCTCAATGGTGAATGATAATGAGCTTCCAGATTTTAGcagcaataataatattaatgcaAATTCATCATctttcaatcctaattataacaacaacaacatttTAGCCCAAACACATACTAATAATAATGATTTCTTCAATGGTCACTACCCAAATATGAACTTGAGCATGCTGAATAATCCGAATCTTTATATGAACTCGTTGCAAATTCTGAAAGCATTGCAGCTCAAGAGGTATCATTATCAACAAgctaatcatcatcatcatttgcaACCCTATATGCCTCAATTTCAAGGAGGATTTGATTTAATCTCTAATCATATaaatgcttcttcttcttcctcctcctcctctcaaGTTTTTGATTGTATGCCACCACAACAGCAGGAGCAACCATTCAATATGGACTCCCTTTGGTCATGA 873 0.3379 MEENNLPPGFRFHPTDEELISYYLRSKVCDPSAFTSKAIAVVDLNKSEPWDLPGKDKEIFTSVAESVPILVGMKKTLVFYKGRAPRGENTNWVMHEYRLHNYNHLFTTSNKEEWVVCRVFHKSISAARKAQEITSSSHLSLESSPNHGDTASMVNDNELPDFSSNNNINANSSSFNPNYNNNNILAQTHTNNNDFFNGHYPNMNLSMLNNPNLYMNSLQILKALQLKRYHYQQANHHHHLQPYMPQFQGGFDLISNHINASSSSSSSSQVFDCMPPQQQEQPFNMDSLWS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2157 290 ProSiteProfiles NAC domain profile. 1 122 IPR003441 GO:0003677|GO:0006355
Sto8g2157 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2 54 231 - -
Sto8g2157 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2 3 55 - -
Sto8g2157 290 SUPERFAMILY NAC domain 3 122 IPR036093 GO:0003677|GO:0006355
Sto8g2157 290 MobiDBLite consensus disorder prediction 135 157 - -
Sto8g2157 290 Gene3D NAC domain 54 126 IPR036093 GO:0003677|GO:0006355
Sto8g2157 290 Pfam No apical meristem (NAM) protein 54 99 IPR003441 GO:0003677|GO:0006355
Sto8g2157 290 Pfam No apical meristem (NAM) protein 7 56 IPR003441 GO:0003677|GO:0006355
Sto8g2157 290 MobiDBLite consensus disorder prediction 265 290 - -
Sto8g2157 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 54 231 - -
Sto8g2157 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2157 Sto-Chr8 14158544 14160383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2157 3 289 NAC Transcription Factor Family AT3G18400 41.908 4.25e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto8g2157 NAM 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2157 - - gmx:100780030 213.386