Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2149 atgaaagcaGCGAACGCATTGGGAGGGAAAACAGCAAGAGCGTGCGACAGCTGCCTACGCAGACGAGCGCGTTGGTTCTGCGGAGCTGACGACGCCTTCCTATGTCACTCCTGCGACAATCTCGTTCACTCCGCCAACCAATTAGCCAGCCGCCACGAGCGAGTCCGCCTCCAAACGGCCTCCTCCCCCTCCAACATCTCATCAACCCCCACGCACCAAACATGGCACAGTGGATTCACGCGCAAGGCAAGAACCCCGCgtcacaacaacaacaaacacgTGTCCTCCCAACAATCCAAGCACCAACAACAcacagaagaagatgaagatgcgGTTTTCATTCATAACTGCCTCCCGCTGGTCCCCGAGCTGGGCAGCGAAGACGCCGTCGTCATGATGGAGGAGAGCGAGTGTCTGGTGCCCGACTTCCTCGACACCGACTTCTGCGCCATCTACGGTACTACTCACCAGATTGGGGACGGGGATAATAATATTATGACGGTGAAGAACGAAGAAGACGCCTGCGATCTGGACAATTTCTCCGAGTTTCTGGAATCCGACATGGATCTCGCGGAATTCGCGGCTGACGTGGAAAGCTTGCTGGAGAGCGGCCTCGTAGTGGATGATGAATCGTCGCAACAACAACAACTAATTGGTTGCAAACAAGAACAAGAATTGAGGGAAGACAAGAGTACTACTACATCGGTGGTGGTGAAGAAGATTAAGGATGAAGAATTACAAGAAGTAGGAGGAGGAGGTTGtaatgagaataataataataagatattcTTGAGGCTAAATTACGAGGAAGTGATAAGCGCTTGGGATAGCCAAGGTTGTGCTTGTCCCTGGACAACGGGGAACCCGCCTCACCTAAACTCGGCCGATGACCTGGGATGGAGTACTGGTGGGGATGTGGAAGGGTGGAGTTATGGGGGGAGGTTGAGGGGGAGTGGAAGAGAAGCGAGAGTGACGAGGTACCGAGAGAAGAGGAGGACGAGGTTGTTTGCGAAGAAGATAAGGTACGAGGTCAGGAAATTGAACGCAGAGAAGagacctagaatgaaaggtcgTTTCGTCAAGAGGGCTTCCTTTCTTGGAGCACCCACTTCTACTGCTttacctcctcctcctcctgctACTGCTGCTGCTTCGCGCTGA 1161 0.4849 MKAANALGGKTARACDSCLRRRARWFCGADDAFLCHSCDNLVHSANQLASRHERVRLQTASSPSNISSTPTHQTWHSGFTRKARTPRHNNNKHVSSQQSKHQQHTEEDEDAVFIHNCLPLVPELGSEDAVVMMEESECLVPDFLDTDFCAIYGTTHQIGDGDNNIMTVKNEEDACDLDNFSEFLESDMDLAEFAADVESLLESGLVVDDESSQQQQLIGCKQEQELREDKSTTTSVVVKKIKDEELQEVGGGGCNENNNNKIFLRLNYEEVISAWDSQGCACPWTTGNPPHLNSADDLGWSTGGDVEGWSYGGRLRGSGREARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRASFLGAPTSTALPPPPPATAAASR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2149 386 CDD Bbox1_BBX-like 14 57 - -
Sto8g2149 386 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Sto8g2149 386 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 239 368 - -
Sto8g2149 386 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 248 - -
Sto8g2149 386 MobiDBLite consensus disorder prediction 58 80 - -
Sto8g2149 386 Pfam CCT motif 320 362 IPR010402 GO:0005515
Sto8g2149 386 MobiDBLite consensus disorder prediction 371 386 - -
Sto8g2149 386 MobiDBLite consensus disorder prediction 58 108 - -
Sto8g2149 386 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 239 368 - -
Sto8g2149 386 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 248 - -
Sto8g2149 386 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Sto8g2149 386 SMART bboxneu5 10 57 IPR000315 GO:0008270
Sto8g2149 386 MobiDBLite consensus disorder prediction 366 386 - -
Sto8g2149 386 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2149 Sto-Chr8 14106443 14107699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2149 4 362 C2C2-CO-like Transcription Factor Family AT1G25440 41.784 6.76e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto8g2149 zf-B_box 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2149 - - gmx:100802113 336.65