Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2076 ATGACCACCACTTCATCTCACATCCTCCGTCACACCACCGCCTTCATCTCCGACGTCCTCTCGCAATCCGAACTCCGGCGCCGCCTCATTGCCACTCTCCACCGCGAGTCTTCAATCTCCAACCAAATCACCTTCAAGCACCTCAAACTCGCCGCTGACACTCTAGAAAATGCCATCTCCGTCTCCAGCCCCACCATCCGATCCTCCTCCCTCAACCTCGCCGAGAAGctccttcttcctctccctCAAAACTCAATTTCctccttccttctctctctcatttatACCCTCTGTAACCGCCGAGTCCACGCCGCCTTGTCTCTCCTCCAAATCTTCCAATTAAACCCTTCCTTGGCTCGATCCGAAATCGCGCCCAATCTCTACGAGCGACTCTTCTCTCTCCACCTCCTCCCTGTTTTCCGACGATTCGATGAGAAGAGAACGCAGATATTGCCATCTACATCGGGGAATTCGAGACgcgataataataataataattgtgatCATTCAATTTCAGACGAATCATCATCTGTGGTTTTGCCTTCCACGAAGCTGTTGTCGCGGATGAGCGACGATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACGAAGAGGTTGTTGATGAGAATTGCAGGATAGTTGCGCAGTACTTCAAACAAGTTTTGGTGAATGATAATGGAAGGGACTCATCGCCGTCAATTATTACTTCGCCATTGTTGATACTGAAGAGCAGCACAGAGGATGGAAAAAGGGAGATCAGTAATCAGGAGGAGATGGTGAAATCAGAAATGCCTCTGTTGAAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAACATCTATTGAACTTTCCAGCAGCAGTTTCAGCAGCAAATCATTGACTCCACCATTTTATCCTCAAAGAGTCTCTCCCAGAATCCTCATACATAAAATGTTTTCTAATGAACTGTCCATGCCAGCCTGTTCAAACTTGGGTACTGAATTTGAGTCTTCGCTAGAAGAAAATCTGCCTTGTTTTTCTTCAGAATCAGAATGTAAGGAAAATGACGAAAATATGGAACTATTGGAGCCTCGACGAAGCCAAAACCAAAAAACAATGCAAACCAATTTTGCAGAATCCCAAGGTTCCCCAGATTATCCCATGGCAGATTATGATACCCAGCCGCATGGAAATGGAAAGCACGCGCCTCCCAAGGATTTCGTCTGTCCAATAACTAGCAATCTTTTTGATGATCCAGTCACGCTCGAGACAGGTCAGACATATGAACGTAAAGCTATTGAAGAATGGTTCAATAGGGGGAACTCAACTTGTCCAATCACCCGCCAGAAGCTGCAAAATACCCAGCTTCCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACAGAATCCCAATTCAATCCCATCACCATCCGAGAGCCTATATGCTGAAACTGAGGTAGCAGCCAAGTCAACATTGCCTTCATCTTCTCCTAACAGTGTTATAACACAAGCCAACGTTGATGGGATGATTAGCGAGTTACGTCATGCGATTAACAATCTATATATGTCAGAGATTCTTGAGGATTCCGAAATGGCCGTGCTACAAATTGAGCAGTGGTGGAAAGAAATAAACCTGGGACATATTCAGAGCATGCTATCAAAACCTCCGATCATTAATGGGTTTATGGAGATTCTGTTCAATTCTGTTAATCCCCAGGTGCTGCAAGCAACGGTTTTTCTTTTGGCTGAGATGGGTTCAAGGGACGATGCTGTTATTAAGACGCTCACCCAGGTGGATTCGGATGTAGAATGTATTATGGAACTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTATTGATATATCTCCTAAAACCTTCCATTATGAGTCTTGCAGAAATGGCCACAGTGGAATCTCTCGTAACAGCTTTTAATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAACCCAAGACAGCTGCCATACTTTTGCTGGCACAGATTCTTCGAAGCGGTGAGGAGAGAATTGCATCTTCTGTAGCCAACACTCTGATAACTGAAAAGGTAATTGGAAGTATTGTTGGCGGCATCGGAGCTGAGTGGGCAGAGGAGAGGATTGCGGCAGTGGAGATCTTATTGAGATGCATTCAGGAGGATGGAACTTGCAGGAATACCATCGCCGAAAAAGCTGAGCTGTCTCCCATTTTGGAAAGCTTCATTGGGGCAACTGATGCAGAACGTTTTAAGATAGTTCAATTCTTTTCTGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATTCTCCACATTATAAAGGAAGAAGGTGCTTTCAGTACCATGCACACTCTCCTCATTTATCTGCAGTCAGCCCTTGAAGACCAATGCCCAGTCGTGGCGGGCCTCCTGCTCCAACTAGATCTTCTGGTAGAACCAAGAAAGATGAGTATATACCGCGAGGAGGCAATGGATACTCTTATTTCATGCATCAGAAACACTGATTTCCCTGCTGCCCAAGTAAAAGCTGCAGAGGCAATTGTGTCATTGCAAGGGAGATTCAACTTCATCGGAAAGCCTCTTACAAGAGCAGTTCTTCTTAAACGTGCTGGCCTCGACAGAGTCAAGATGGATCGTGTCAGCAATTTTGGGGAAGAATTTGAAACAACTCCAGAAGAAGAGAAGGCAGCTGATgattgggaaagaaaaattgcATCTGTTCTAGTTGGCCATGAATTTGGTCTACTTTTTGAGGCTTTAGCAGATGGCTTAAAGAGCCGAAATGCAGAATTAAGTTCAGCATGCTTTGTATCAGCTACATGGCTTACACACATGCTTACCGTTTTACCAGATACAGGAATACAAGGAGCAGCCCGTGTCTGCTTGCTTAAGCGCTTTGTATCAATATTAAAATCTGCTAAGGACACGGAAGACAGAATCCTTTCTATGCTTGCTCTAAATAGCTTTCTTCATTTCCCTGATGGGTTGCATGACCTCACTTCATACACTAAGGATGTCTTAAAAGGTTTAAGAGAGCTAAAGAGATTCTCCCCCCTGGCATCGGAAATGCTTAAAGTTCTGGTTGAAGACAATGAGTCCAAAACAGACATCTGGATGCATAAAGAGTTAATTCAGGTAGATTGCAGCGAGAATGGAGAAGTATTGTCTGTCATTTGCCACAAGGATAAAATATTTTCAGGGCATTCAGATGGAACTATCAAGGTCTGGACAGTTAAGGGTAGCTTATTCCATCTGACACAAGAGACTCAAGAACACATGAAGGCTGTTACAAGCTTGGCAATTTCAGAATCTGGCGACAGACTATACAGTGGTTCACTCGATCGAACTGCAAAGGTCTGGTCTATAGGAAAAACAGCAATACATTGTGTTCAGGTGCATGATATGAAAGATCAGATTCATAATTTAGTTGTAACAAATAGCAAATTCTGCTACATTCCTCAGGGAGCTGGTGTCAAGGTTCATTCATGGAATGGAGAATCGAGATTGTTGAACTCTCACAAATATGTGAGGTGCTTGGCTCTTGTTCATGAGAAATTATACTGTGGATGCCACGACAATAGTATTCAGGAGATTGACTTGGAAACAGGAACAGTCAGTACCATTCAAAGTggtattaaaaaattacttggTAAAGCAAATCCTATTCATGCACTGCAAATTCGTGGTGAACTTATATATGCAGCTTGCTCTTCCTTGGAAGGAGCTGTAATAAAGACATGGAGCACTTCCAATTACACGATGGTTGGATCAGTGGTAACTGCATCAGACGTGAGGGCAATGGCAATGAACTCAGAATTAATTTACTTGGGATGCAAGGGAGGAGCTGTCGAAATTTGGGATAGGAAGAAGCAGAATAGAATTGATACATTACAAATTGGTACAAATGGTAAGGTTGCTTGCATGGCTGTCGATGGCAATGAAGAAATTTTGGTGATCGGAACCTCTGATGGCCGAATTCAGGTACATCTCTCTGAATTATAG 4005 0.4262 MTTTSSHILRHTTAFISDVLSQSELRRRLIATLHRESSISNQITFKHLKLAADTLENAISVSSPTIRSSSLNLAEKLLLPLPQNSISSFLLSLIYTLCNRRVHAALSLLQIFQLNPSLARSEIAPNLYERLFSLHLLPVFRRFDEKRTQILPSTSGNSRRDNNNNNCDHSISDESSSVVLPSTKLLSRMSDDQASKLRELEREYEEVVDENCRIVAQYFKQVLVNDNGRDSSPSIITSPLLILKSSTEDGKREISNQEEMVKSEMPLLKNGRYNPIWSERETSIELSSSSFSSKSLTPPFYPQRVSPRILIHKMFSNELSMPACSNLGTEFESSLEENLPCFSSESECKENDENMELLEPRRSQNQKTMQTNFAESQGSPDYPMADYDTQPHGNGKHAPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEQNPNSIPSPSESLYAETEVAAKSTLPSSSPNSVITQANVDGMISELRHAINNLYMSEILEDSEMAVLQIEQWWKEINLGHIQSMLSKPPIINGFMEILFNSVNPQVLQATVFLLAEMGSRDDAVIKTLTQVDSDVECIMELFKKGLTEAVVLIYLLKPSIMSLAEMATVESLVTAFNKKEEDLLKMCIKPKTAAILLLAQILRSGEERIASSVANTLITEKVIGSIVGGIGAEWAEERIAAVEILLRCIQEDGTCRNTIAEKAELSPILESFIGATDAERFKIVQFFSELVKLNRRTFNEQILHIIKEEGAFSTMHTLLIYLQSALEDQCPVVAGLLLQLDLLVEPRKMSIYREEAMDTLISCIRNTDFPAAQVKAAEAIVSLQGRFNFIGKPLTRAVLLKRAGLDRVKMDRVSNFGEEFETTPEEEKAADDWERKIASVLVGHEFGLLFEALADGLKSRNAELSSACFVSATWLTHMLTVLPDTGIQGAARVCLLKRFVSILKSAKDTEDRILSMLALNSFLHFPDGLHDLTSYTKDVLKGLRELKRFSPLASEMLKVLVEDNESKTDIWMHKELIQVDCSENGEVLSVICHKDKIFSGHSDGTIKVWTVKGSLFHLTQETQEHMKAVTSLAISESGDRLYSGSLDRTAKVWSIGKTAIHCVQVHDMKDQIHNLVVTNSKFCYIPQGAGVKVHSWNGESRLLNSHKYVRCLALVHEKLYCGCHDNSIQEIDLETGTVSTIQSGIKKLLGKANPIHALQIRGELIYAACSSLEGAVIKTWSTSNYTMVGSVVTASDVRAMAMNSELIYLGCKGGAVEIWDRKKQNRIDTLQIGTNGKVACMAVDGNEEILVIGTSDGRIQVHLSEL 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2076 1334 ProSiteProfiles U-box domain profile. 398 473 IPR003613 GO:0004842|GO:0016567
Sto8g2076 1334 Coils Coil 190 210 - -
Sto8g2076 1334 SMART Ubox_2 402 466 IPR003613 GO:0004842|GO:0016567
Sto8g2076 1334 CDD RING-Ubox_PUB 403 445 IPR045210 -
Sto8g2076 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1090 1123 - -
Sto8g2076 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 1329 - -
Sto8g2076 1334 Gene3D - 1031 1153 IPR015943 GO:0005515
Sto8g2076 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 1329 - -
Sto8g2076 1334 Pfam WD domain, G-beta repeat 1090 1122 IPR001680 GO:0005515
Sto8g2076 1334 SUPERFAMILY RING/U-box 395 475 - -
Sto8g2076 1334 Pfam U-box domain 400 470 IPR003613 GO:0004842|GO:0016567
Sto8g2076 1334 SUPERFAMILY ARM repeat 38 998 IPR016024 -
Sto8g2076 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1090 1123 IPR001680 GO:0005515
Sto8g2076 1334 MobiDBLite consensus disorder prediction 151 175 - -
Sto8g2076 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 480 IPR013083 -
Sto8g2076 1334 SUPERFAMILY WD40 repeat-like 1050 1329 IPR036322 GO:0005515
Sto8g2076 1334 Gene3D - 1154 1333 IPR015943 GO:0005515
Sto8g2076 1334 SMART WD40_4 1291 1331 IPR001680 GO:0005515
Sto8g2076 1334 SMART WD40_4 1041 1078 IPR001680 GO:0005515
Sto8g2076 1334 SMART WD40_4 1252 1288 IPR001680 GO:0005515
Sto8g2076 1334 SMART WD40_4 1167 1200 IPR001680 GO:0005515
Sto8g2076 1334 SMART WD40_4 1083 1122 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2076 Sto-Chr8 13560041 13567818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2076 400 481 U-box Gene Family AT3G46510 51.220 2.83e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2076 - - gmx:100808867 1789.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2076 8 13560041 13567818 Sto8g2076 8 13560041 13567818 ECH