Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2073 TTGAACCTCAAAGCCACCGAGCTACGGCTCGGATTGCCCGGCTCCGAGTCACCGGAGAGGGACGGCGGCGCCGGGAAGAGTGTGGTGGTGTGTGGGGCCAAGAGGGGTTTCTCTGACACCATGAATGGTGGTTGTGGGAAGTGGGTTATGTCTGGGAATGGTGGATCTGAAGTGGGTTTGGTGAAAGATAGTATCATCCCTCACTCCCCTAAGCCATTATTGCATGAGAAGAAGCCCCAGATTTCTGCCCTTCCTCCTAAGGAACAAGTGGTGGGATGGCCACCAATCCGATCTTTCCGGAAGAACTCGATGGCCACTAATCCTCAAAAGAACACCGACGAAGCAGAAACCAAGTCTGGATGTCTTTATGTAAAAGTAAGCATGGATGGTGCCCCCTACTTGAGGAAAGTGGATCTCAAACACTTTGCCAGTTACATGCAGCTCTCTTCAGCACTCGAAAAGATGTTTAGCTGTTTTACAATCAGTCAATGCGGATCTCACGGAGCTTCCAATAACGATAATTTGAGCGAAAGTAGGTTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTGCCCTGGGAGATGTTCACCGACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCCATTGGTCTAGCACCAAGAGCAATGGAAAAGTGCAAAAGCCGAAACTAG 726 0.489 LNLKATELRLGLPGSESPERDGGAGKSVVVCGAKRGFSDTMNGGCGKWVMSGNGGSEVGLVKDSIIPHSPKPLLHEKKPQISALPPKEQVVGWPPIRSFRKNSMATNPQKNTDEAETKSGCLYVKVSMDGAPYLRKVDLKHFASYMQLSSALEKMFSCFTISQCGSHGASNNDNLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2073 241 ProSiteProfiles PB1 domain profile. 121 223 IPR000270 GO:0005515
Sto8g2073 241 Pfam AUX/IAA family 6 232 IPR033389 -
Sto8g2073 241 Gene3D - 115 235 - -
Sto8g2073 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 234 IPR003311 GO:0005634|GO:0006355
Sto8g2073 241 SUPERFAMILY CAD & PB1 domains 118 222 - -
Sto8g2073 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2073 Sto-Chr8 13506016 13508178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2073 101 239 B3 DNA Binding Superfamily AT1G30330 28.058 4.43e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sto8g2073 AUX_IAA 5.4e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2073 K14484 - gmx:100803754 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2073 8 13506016 13508178 Sto8g2073 8 13506016 13508178 ECH