Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2063 ATGGAGGATGAGAATGGGCTTGAGCTTAGGCTGGGTTTATCTTTTGGTGGCTCATCTATCAAACCCAAGGGTAAGAATGGTAGCTCCTTGGATACTGGGGCAGAAGAAGTTGATAGAGGTGGCAATAAGGAGGATGATTTCAAGAACTTTGTTAATGCAGGAAATCAAAGAACCTATCCCTCAAAACCTGAGGAGAACTTCTTTGGTGACCTTGGAAAGGCCAAAGAAGATAATGCTTCCATAAATTTAAATGGGAGAGGACTTTGGTTTGCGGACAATAATAAACATAGTGAGTTTGTGGAAGATAAACAATTAGAGACAGGAAATAAACGAAAAATGTTTTTTGATGagataaataatcaaaagaaacGTGAAACTGAAGTTCGTCTTGGTGATTTACGTGACAGCACAAGAACGTCACACACTTCTGTAGCTGAAGATGGCTCAAAGGCCAAAAATGAAGATGAGGCAGATTCTGAAGCTGAGAACTTAACCACTACGCATTTATCACTCAACAATGATGGTTCTAGACGATTCATGAGGGTTGGTGGTTCTTCTGGTGCTCTAAATGAAGTTTTTAAAGTTTCTGACTCAAGCATGACTGACTTGAATGGGCAACAGAGGTTTATTGGGACATCCAATAAAGATTTCAAACTTGCAAACTTGACTTGTGGTGCATCAAGCCCTCAAATGCCAGGGATGATTCGACATCCAATGATGGATAAAGATAACTCAAGGGGTTTTGTTTTTCACCCTCAACATTTACACCCTTCCTTTGCTGGAACTGGGCCACCGAACTCAGTCTCTAATAATATATCTGAGGTCATGCCGTTTGAGGAAAGGCCATTAGAACGAAGCAAAGGAGACGGAAAACAGCATGTTCTACGCAATTCTTCTTCACAGATCGAAGATGTGAAAGGAAGAAGCACCAACATTAGGGAAAAAGATGCGTCAGACCAATCAACAAGAGAAGGTTTTTCCATTGATTTTTCAACCATTAAGCCAGGACTTGCCGCAGAAGTAAAATTCGGTGGGTCCGGTTCCTTACCAAACCTACCTTGGGTTTCCACTAAAGGCACAGGTACAAATGGCAGGACAATATCTGGTGTTACATATAAATACAACAATAACCAAATCAGGATTGTTTGTGCTTGCCATGGTACTCACATGTCCCCTGACGACTTCATTTGGCATGCAAATGAAGACGTTGCTAATCCAGAGATTGACTTTCACTTTCTAGTTCCTAGTTTGCCCATTCAGGAACGTGCAAAGGCCGAGGAAAAGGAAGCACAGACAACACAGAATTCACCATCCATAGATGCCATCTCGAATTTCCAACCAAGCCTAGCCGTAGTCATAGGAATCCTGTGTCTCATGTTTTCTCTAACATTCCTTCTTCTCATGTATGCGAAATTCTGTCAAAGCAGAGCATCATCAGCCCACGTTGACCCAGAAAACCACCCTGTCCTTCTCAGATCAAGATCTAGATTCTCAGGAATCGACAAGACTGTCATAGAATCACTCCCTTTCTTCAGATTCTCTTCTCTCAGAGGCTCAAAGGAAGGCCTTGAATGTGCAGTGTGCTTATCAAAGTTCGAAGATATTGAAATCCTAAGACTGCTTCCCAAGTGCAAGCATGCCTTTCACATGGATTGTATCGACCATTGGCTCGAGAAACACTCGAGCTGTCCTCTTTGTAGACACAAGGTGAATTCTGAAGACCAAACCATGTTCACATATTCAAACAGTATGAGGCTTCTTCTGGGAAACCAATCAGAGCTTGGTGATGAACCCAATATAGAGATCTTTGTGcagagggaagaagaagatgagcgTCATGGGTCTTCCAGATTCAGTATTGGAAGCAGCTTCAGGAAATTCGAAAAGggtattattaaggaagaagaaTTGCCAATCCAAGAAGATCattcagaagaagaagaaaaggatggtggtggtgagaaGTTGTATCACAAGCATAAACACAAGATCACTGTGTCTGATGTGGTGTTCAAGCACAGATGGAGCAACGTGACCTCTTCTGACCTTATGTTCTTGAATTCAGAGATGGTTCATGCTGTGCATAGCGAAAGATTCAATCTTTTGGAGTCAAATGGTGGAGAAGAGATTCCACTTTCAAGATCAGTgcaaaatgaaaatgttattgACATAAAGGAGGAGATGGAGAGGAAAATTTCGTTTGAGACTAAGGTTGGtacattaaataataagatgaaCTCAACTTTTTTAGACACATCAGATTGTGCAGGAGCTTCTTCATCTTCTGGTAATACTCATACTTCAAAATATGTGAATCCGGGTGATAAAAGATGCATGTCAGAAATAACTGGAGTGTCTAGATTTGGAGATATGGGCATGAAAAACAGGGCATTGAAGGAGTCTTGTGTGTTTGAAAATAATGTTAAAGAGGAAAGAATGAGGCAGCTATGGCTGCCAATAGCTAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAAGAAGATCTCAGCCATTAGATGTATAG 2523 0.3928 MEDENGLELRLGLSFGGSSIKPKGKNGSSLDTGAEEVDRGGNKEDDFKNFVNAGNQRTYPSKPEENFFGDLGKAKEDNASINLNGRGLWFADNNKHSEFVEDKQLETGNKRKMFFDEINNQKKRETEVRLGDLRDSTRTSHTSVAEDGSKAKNEDEADSEAENLTTTHLSLNNDGSRRFMRVGGSSGALNEVFKVSDSSMTDLNGQQRFIGTSNKDFKLANLTCGASSPQMPGMIRHPMMDKDNSRGFVFHPQHLHPSFAGTGPPNSVSNNISEVMPFEERPLERSKGDGKQHVLRNSSSQIEDVKGRSTNIREKDASDQSTREGFSIDFSTIKPGLAAEVKFGGSGSLPNLPWVSTKGTGTNGRTISGVTYKYNNNQIRIVCACHGTHMSPDDFIWHANEDVANPEIDFHFLVPSLPIQERAKAEEKEAQTTQNSPSIDAISNFQPSLAVVIGILCLMFSLTFLLLMYAKFCQSRASSAHVDPENHPVLLRSRSRFSGIDKTVIESLPFFRFSSLRGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHMDCIDHWLEKHSSCPLCRHKVNSEDQTMFTYSNSMRLLLGNQSELGDEPNIEIFVQREEEDERHGSSRFSIGSSFRKFEKGIIKEEELPIQEDHSEEEEKDGGGEKLYHKHKHKITVSDVVFKHRWSNVTSSDLMFLNSEMVHAVHSERFNLLESNGGEEIPLSRSVQNENVIDIKEEMERKISFETKVGTLNNKMNSTFLDTSDCAGASSSSGNTHTSKYVNPGDKRCMSEITGVSRFGDMGMKNRALKESCVFENNVKEERMRQLWLPIARRTVQWFVNRERRSQPLDV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2063 840 MobiDBLite consensus disorder prediction 13 47 - -
Sto8g2063 840 MobiDBLite consensus disorder prediction 126 170 - -
Sto8g2063 840 Pfam Ring finger domain 524 567 IPR001841 -
Sto8g2063 840 MobiDBLite consensus disorder prediction 307 322 - -
Sto8g2063 840 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 420 836 - -
Sto8g2063 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 577 IPR013083 -
Sto8g2063 840 MobiDBLite consensus disorder prediction 280 322 - -
Sto8g2063 840 ProSiteProfiles Zinc finger RING-type profile. 525 567 IPR001841 -
Sto8g2063 840 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 420 836 - -
Sto8g2063 840 CDD RING-H2_PA-TM-RING 524 567 - -
Sto8g2063 840 MobiDBLite consensus disorder prediction 126 162 - -
Sto8g2063 840 SMART ring_2 525 566 IPR001841 -
Sto8g2063 840 SUPERFAMILY RING/U-box 504 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2063 Sto-Chr8 13421927 13427147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2063 410 836 C3H Transcription Factor Family AT4G28890 46.358 1.01e-102 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2063 K10664 - gmx:100803207 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2063 8 13421927 13427147 Sto8g2063 8 13421927 13427147 ECH