Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2058 ATGCAGAAAGCGGcaggaagaaggaagaggaggCACATATGGGTAGAAAGAAATGACCATATGAGAAAGCCCAAACGACCCAGAGATAACACCAACACCAACACTAAACACCCGGTGTACAGAGGAGTTCGAATGCGGGCATGGGGCAAGTGGGTATCCGAAATCCGCGAGCCCCGCAAGAAAAATCGGATCTGGCTCGGCACTTTCGCCACGCCCGAGATGGCCGCGCGTGCCCACGACGTCGCCGCTCTCACCATCAAAGGCACCTCCGCCATCCTCAACTTCCCCCATCTCGCCGCCTCCCTGCCCCGACCCGCCTCCGCCTCCCCCCGAGATGTCCAGGCTGCCGCCGCCAAGGCCGCCTCCATGGACAACCCCCCGACCACCACGTCGCTctcgtcttcctcctcctcctccgatTCCTCCTCCCCGGAGGAGGAGCTGGGCGAGATAGTGGAGCTTCCGCCTCTGGGCACGAGTTTCGAGTGGCCCGACCCGAGTAACGAGTTCGTGTTTTTCGACCCGGAGGATGGGTGGCTCTATCCTCACCCGTGGTACCACGGCATTTATGATCACACATCAATGCAAATAGCAGAAGCAGAGGAGAGTATGGTTATGTGTGGATTTGAGAGTTCGTTGTGGCAACATTAA 651 0.5469 MQKAAGRRKRRHIWVERNDHMRKPKRPRDNTNTNTKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALTIKGTSAILNFPHLAASLPRPASASPRDVQAAAAKAASMDNPPTTTSLSSSSSSSDSSSPEEELGEIVELPPLGTSFEWPDPSNEFVFFDPEDGWLYPHPWYHGIYDHTSMQIAEAEESMVMCGFESSLWQH 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2058 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 25 215 - -
Sto8g2058 216 MobiDBLite consensus disorder prediction 103 149 - -
Sto8g2058 216 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Sto8g2058 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 215 - -
Sto8g2058 216 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Sto8g2058 216 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Sto8g2058 216 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Sto8g2058 216 MobiDBLite consensus disorder prediction 123 145 - -
Sto8g2058 216 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Sto8g2058 216 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Sto8g2058 216 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Sto8g2058 216 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2058 Sto-Chr8 13396146 13398467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2058 22 198 AP2-EREBP Transcription Factor Family AT5G11590 58.549 7.66e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto8g2058 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2058 K09286 - gmx:100804801 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2058 8 13396146 13398467 Sto8g2058 8 13396146 13398467 ECH