Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2014 ATGATGCTCGGAGAGCCCCATCGTGCGAATCCGACGGTTCATATACCGCCGTGGCCGGTCCTTGATGATCCGATGTCGGAGATGTACTCTCCTTACCCTGTGAGCGGCGTCTCTGTTAACTCCGACGGCAATGCCAGCGGCGGCGATTACTCTCCGTACTATGTGCAGGAAGCACTGACGGCACTCCAGCGTTATCTGCCGTCAAACGACGCGGATATCGATTCTGACTCTGAGATTCTGGGACGAGATTTGGATGCTCCGGTGGATGCCTTTTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGAAGGTGCGCACGTGGTAGGTCACATGACTGGACTGAGTGTCCTTATGCGCATCCCGGCGAGAAGGCTCGCCGGAGGGACCCAAGGAAGTACCACTATTCGGGTACTGCATGCCCCGATTTTCGCAAGGGGAATTGCAAGAAAGGGGATGCATGTGAGTTCGCTCATGGGGTTTTTGAGTGTTGGCTTCACCCGGCGCGTTATCGTACTCAGCCATGCAAGGATGGTACCAGTTGCCGCAGAAGAGTCTGTTTCTTTGCTCACACGCCGGAGCAACTCAGGGTTCTGCCTCAGCAGAGTCCGAGGAGTGCCAACTCGCCGGATTCTTATGACGGGTCTCCTTTCAGGCAGGCGATTGAGTCTTCCTGTGTAAAAACGCTGCCGTTCATGTCCTCTCCGGGGTCTATTTCCCCGCCTGCGACTCCTCCGGCGGAATCTCCTCCTATGTCTCCGATGACGCAGTCTCTGAGTCGCTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTCGGAAAGGTTAAGTCAATGCCCACCTCCAGGAATGTTCCAATGGGGTCTCCCTGTTTCGGATCTCCAAGGGGATCCATGCTCCGACCCGGATTCTGTAGCCTCCCCTCCACTCCCACCGAGGCGCCGATTCGTTCTGGTGGCACCTATTTCGATCTCTGGGATCAGAGTTGCGAGGAGGAGCCTGCGATGGAGAGGGTGGAATCTGGAAGGAACATACGGGCGAAGATGTTTGAGAAATTGAGCAAAGAGAACTCTCTGGATAGATCGGGTCCCAGCCCATCGGGCGGGGCTCCGGATGTTGGTTGGGTTTCGGAGCTGGATGATCCAAGCTCCTGGCTTTTATCCAAATCATTTATTAGAGACCATAGCTTAGAATGGATGATACTTGATTCTACAGAAGAGGCAAGAAGTTGTGGGTGTTCTTGGGTTGGGGATGAGGATTCCACATTTCAGGCTGATGTATAA 1305 0.5433 MMLGEPHRANPTVHIPPWPVLDDPMSEMYSPYPVSGVSVNSDGNASGGDYSPYYVQEALTALQRYLPSNDADIDSDSEILGRDLDAPVDAFSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDGSPFRQAIESSCVKTLPFMSSPGSISPPATPPAESPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSMPTSRNVPMGSPCFGSPRGSMLRPGFCSLPSTPTEAPIRSGGTYFDLWDQSCEEEPAMERVESGRNIRAKMFEKLSKENSLDRSGPSPSGGAPDVGWVSELDDPSSWLLSKSFIRDHSLEWMILDSTEEARSCGCSWVGDEDSTFQADV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2014 434 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Sto8g2014 434 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Sto8g2014 434 MobiDBLite consensus disorder prediction 198 217 - -
Sto8g2014 434 MobiDBLite consensus disorder prediction 361 382 - -
Sto8g2014 434 MobiDBLite consensus disorder prediction 238 252 - -
Sto8g2014 434 Gene3D - 136 199 - -
Sto8g2014 434 MobiDBLite consensus disorder prediction 235 264 - -
Sto8g2014 434 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 386 - -
Sto8g2014 434 PANTHER UNKEMPT FAMILY MEMBER 7 386 IPR045234 -
Sto8g2014 434 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Sto8g2014 434 SMART c3hfinal6 135 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2014 Sto-Chr8 13011593 13013990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2014 85 293 C2H2 Transcription Factor Family AT5G12850 47.248 2.66e-57 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto8g2014 zf-CCCH 4.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2014 - - jre:109010264 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2014 8 13011593 13013990 Sto8g2014 8 13011593 13013990 ECH