Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2013 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTGAAGAGAGGGCCTTGGTCTCCTGAAGAAGACGCCACTCTCAAAAACTACCTTCACAAACATGGCACTCCTGCTAATTGGATTGCTCTCCCCCAAAAagcagGCCTCAAGCGTTGTGGGAAGAGCTGTAGACTGAGATGGCTCAACTATCTAAGGCCTCATATAAGGCTTGGAGGTTTCACTGACCAAGAAGACAACATTATCTGCACCCTCTATGCTACCATTGGAACTGCTCAGTTGCCTGGAAGAACGGACAATGATGTGAAAAACCACTGGAACACTAAGTTAAAGAAGAAGTTCTTCAGGGCACCAAACACTAATAATATTGCTTTTTCCCCTCAAACACCTCATCAAGTTGAAGCCTTTGTGTTTGATCACCATAATTTAGCCTCTTTTGAACCTTGTGTTCCGCAAAACCCAGctccatcatcattatcatcaatgCCTATGGAATCCCAAGTTTCAGAATTTGGCAGCAGCTTCAGTGAAAGTTTGAGTGCACCTATTACCACTCTgtcaacttcttcttcttcagcttGCTTGGAAGATGAGAATATTTTTAATGAACATACCAAATGGTTTGGATTTGAGCATGCTGATTATCATAATGATGCAGGATTTCTTGAGTTTGTGCAGGCTGATCTCCTCAATTATGGCTTTGCTTCTTAA 702 0.3974 MGRAPCCDKANVKRGPWSPEEDATLKNYLHKHGTPANWIALPQKAGLKRCGKSCRLRWLNYLRPHIRLGGFTDQEDNIICTLYATIGTAQLPGRTDNDVKNHWNTKLKKKFFRAPNTNNIAFSPQTPHQVEAFVFDHHNLASFEPCVPQNPAPSSLSSMPMESQVSEFGSSFSESLSAPITTLSTSSSSACLEDENIFNEHTKWFGFEHADYHNDAGFLEFVQADLLNYGFAS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2013 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 111 IPR017930 -
Sto8g2013 233 PANTHER OS09G0431300 PROTEIN 1 196 - -
Sto8g2013 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Sto8g2013 233 SUPERFAMILY Homeodomain-like 11 103 IPR009057 -
Sto8g2013 233 SMART sant 67 109 IPR001005 -
Sto8g2013 233 SMART sant 13 64 IPR001005 -
Sto8g2013 233 CDD SANT 16 62 IPR001005 -
Sto8g2013 233 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto8g2013 233 Gene3D - 70 132 - -
Sto8g2013 233 Gene3D - 7 68 - -
Sto8g2013 233 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto8g2013 233 PANTHER TRANSCRIPTION FACTOR RAX3 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2013 Sto-Chr8 13003337 13004255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2013 1 180 MYB Transcription Factor Family AT5G57620 54.839 3.03e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto8g2013 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2013 K09422 - gmx:778160 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2013 8 13003337 13004255 Sto8g2013 8 13003337 13004255 ECH