Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1988 ATGGACATAACCCCCACAACAACCACCAACATCACCGCCTCCAATACTACCAGTACAAAATCCCCAGAACCTGACACTGAAACTCCGACCCGGATCCAACCTCCCACCACCACCAAGCCCCTCTCCTTCTCCAACGGCGTTCTCAAGCGCCACCACCCCCactcccaccaccaccaccagcagCCCGTCGCCGTTACCTACAAAGAATGCCTCAAAAACCATGCAGCCAGCTTAGGAGGCCACGCGCTCGACGGTTGTGGCGAGTTCATGCCCTCTCCTAACGCCAATTCCGCCGACCCAAGCTCCATCAAATGCGCCGCCTGTGGCTGCCACCGCAATTTCCACCGCCGCGAACCCGACGAGCCTATTTCCACAACCCACGTCATCGAGTACCAGCCCCACCACCGGCATCACCCTCCTCCACCTCCTCCCTTCCAAGCGTCCAATCGGAGCCCCAATTCAGCTTCCCCGCCTCCGATCTCCTCATCCTACTACCCCTCCGCACCCCACATGCTTCTGGCTCTCTCCGCTGGCCTATCGGCTCACCCGGAGAGCACGGCGGCTCCCGCCCACGGTTTGGGGATGCCGAGCCCGAATGCGAGGAAGCGGTTCAGGACCAAGTTTACTCAAGACCAGAAGGATAAGATGTACCAGTTCGCAGAGAAAGTGGGGTGGAAGATGCAGAAGAGGGACGAGGAATTGGTGCAAGAATTCTGCCATGAGGTTGGGGTGGATAGAGGGGTTCTGAAGGTTTGGATGCACAATAACAAGAACACTTTCGGGAAGAGAGATGCGAATGGTAATAGCAGGAGCGTTCTTGAGCTGCAACAACCCAACAGCAACAACGGCGAAATCAACGGCAACGGCAGCACCGGGGTCGACCCGAATCATCACTACCAGGACGACGGTGGGGCGAACGCCGTCTTTATTAATGAGATGATGAATGGCCTTTAA 954 0.5577 MDITPTTTTNITASNTTSTKSPEPDTETPTRIQPPTTTKPLSFSNGVLKRHHPHSHHHHQQPVAVTYKECLKNHAASLGGHALDGCGEFMPSPNANSADPSSIKCAACGCHRNFHRREPDEPISTTHVIEYQPHHRHHPPPPPPFQASNRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPESTAAPAHGLGMPSPNARKRFRTKFTQDQKDKMYQFAEKVGWKMQKRDEELVQEFCHEVGVDRGVLKVWMHNNKNTFGKRDANGNSRSVLELQQPNSNNGEINGNGSTGVDPNHHYQDDGGANAVFINEMMNGL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1988 317 MobiDBLite consensus disorder prediction 1 62 - -
Sto8g1988 317 MobiDBLite consensus disorder prediction 132 163 - -
Sto8g1988 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 288 - -
Sto8g1988 317 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 288 - -
Sto8g1988 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 201 258 IPR006455 -
Sto8g1988 317 SUPERFAMILY Homeodomain-like 192 262 IPR009057 -
Sto8g1988 317 MobiDBLite consensus disorder prediction 278 303 - -
Sto8g1988 317 Gene3D - 193 261 - -
Sto8g1988 317 MobiDBLite consensus disorder prediction 278 295 - -
Sto8g1988 317 MobiDBLite consensus disorder prediction 1 44 - -
Sto8g1988 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 118 IPR006456 -
Sto8g1988 317 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Sto8g1988 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1988 Sto-Chr8 12886961 12888047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1988 1 266 ZF-HD Transcription Factor Family AT5G15210 53.114 1.41e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto8g1988 ZF-HD_dimer 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1988 - - jre:108984667 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1988 8 12886961 12888047 Sto8g1988 8 12886961 12888047 ECH