Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1986 ATGGGAAGACCGCCTTGTTGTGACAAAGAAGGGGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTCTCTTATATTCAACAACATGGTCCTTCCAATTGGAGGGCAGTTCCCACCAACACAGGATTGTCAAGGTGCAGCAAAAGTTGCCGGCTTAGATGGACTAATTACCTAAAGCCAGGAATTAAACGTGGCAACTTCACAGACCAAGAGGAAAAAATGATCATCCATCTTCAAGCCCTTTTAGGCAATAgATGGGCAGCCATAGCTTCTTACCTTCCACAGAGAACAGACAACGACATAAAGAACTACTGGAACACCCATTTGAAGAAGAAGCTGAAGAAATTAGAAACAGGAGGAGATCATATTTCGGCATCAATGGGATTGGGAATGGGAAGAGGGCAGTGGGAAAGAAGGCTTCAAACTGATATACACATGGCCAAGAGAGCCCTCAGTGAGGCTCTGTCACCACAAGACACCTTCCCCTCTCAATCTCAATCCCAAGAATCAAACCCTTCTAAGCCAACACGCACGCCCTTAAGCTATGCCTCATCTGCAGATAACATTGCTCGCTTGTTAAAAGGATGGATGAAGAATCCACCAAAACCCTCTACCCTCCTCTCTGCTTCTTCAACCTCTGCTTCTGCTATGACTATGAGTAGTAGTGCATCTAGTGAAGCACTCACCAATACACCTGAAGTCTCTGTGTCCGATCATACCAATACTTTCCAACATTCCCTATTTGGGTTTGAAACATCCTTGGATTGTTCTTCTAATGACTCTGATTTGAATCACTTCTCCCCTCATGATACCAAGCCTAGTATCACTCATGATGATGATCATCACGATGTTGTGGATACGCCCTTCTATTTGCTTGAGAAGTGGCTTCTAGATGATAAagttgaagaagaagataatgCCCATTTTTTCTAG 942 0.4321 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQQHGPSNWRAVPTNTGLSRCSKSCRLRWTNYLKPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLETGGDHISASMGLGMGRGQWERRLQTDIHMAKRALSEALSPQDTFPSQSQSQESNPSKPTRTPLSYASSADNIARLLKGWMKNPPKPSTLLSASSTSASAMTMSSSASSEALTNTPEVSVSDHTNTFQHSLFGFETSLDCSSNDSDLNHFSPHDTKPSITHDDDHHDVVDTPFYLLEKWLLDDKVEEEDNAHFF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1986 313 Gene3D - 68 128 - -
Sto8g1986 313 CDD SANT 16 61 IPR001005 -
Sto8g1986 313 SMART sant 13 63 IPR001005 -
Sto8g1986 313 SMART sant 66 114 IPR001005 -
Sto8g1986 313 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 306 - -
Sto8g1986 313 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto8g1986 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto8g1986 313 Gene3D - 13 66 - -
Sto8g1986 313 MobiDBLite consensus disorder prediction 159 185 - -
Sto8g1986 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto8g1986 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto8g1986 313 CDD SANT 69 111 IPR001005 -
Sto8g1986 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sto8g1986 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto8g1986 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto8g1986 313 MobiDBLite consensus disorder prediction 157 185 - -
Sto8g1986 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1986 Sto-Chr8 12864265 12865427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1986 1 306 MYB Transcription Factor Family AT5G62470 49.148 1.16e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g1986 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1986 K09422 - gmx:780542 346.665