Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1984 ATGGAGGAGAGGAATGAAATGGATAAGATGGACGACGTGATGCTGCCTGGTTTCCGGTTTCACCCCACAGACGAGGAGCTCGTTGGGTTTTACCTAAGAAGAAAGATACAGCACAAATCTCTTCCTATTGAGCTCATTAAGCAAGTGGACATTTACAAATACGATCCCTGGGATCTTCCAAAGTTGGCGAGTAGTGGGGAGAAAGAGTGGTACTTCTACTGTCCAAGAGATAGGAAATACAGAAACAGTGCACGCCCAAACAGAGTGACACGAGCAGGATTTTGGAAGGCCACGGGAACAGACCGTCCTATATACTCCTCACAAGGCAAATGCATCGGTTTGAAGAAGTCGCTTGTGTTCTACAGAGGCAGAGCAGCCAAAGGCATCAAAACTGACTGGATGATGCATGAGTTTCGTCTCCCTTCACTCTCATCATCAGactcacctcctcctcctcccaagAAGCCCTCTGCCTCATCAGACAAAACCCTTCCTCCAACTGATTCATGGGCCATTTGTAGGATATTCAAGAAGACAAACTCCATGTCCATGGCACAGAAAGCTCTATCTCATTCTTGGATCACTCAGTTGCCGGAGAGCATGGTGTCTGATATACTACTCACTAATTCTCATCCGGCAGAAATAGGTTGTTCTAATAATTTCTCAGCTTCTTACAGTAATAACACACAAGTGTCAAACGGAGATGTCGTAGTAGCAGACACATTCATGTTCTCCACATTTGATCAATCACCAGGTGGTAGTGGTGGTGTGTATAATATGGGGTTTGAAGGCCCAAATCATCATCAGTTTAGCAGCTTCTCATCAGTGAGTGTAGCTGAGGATACACAAGGATCATCCAACATAAGTAGTTCAGCAACAGTAGCAGATGCAATTGGGTTTCCCTTCAGCTTGCCTCCAATTCCAAATGATGCTAATTGGAAGGCTAATATTCTGCCATGGGACTCACCTCCTTGTCCTACCGACATCTCCACTACTACCTACTCTAATTCTACCACTAATAGATGCTGCACTTGA 1035 0.4396 MEERNEMDKMDDVMLPGFRFHPTDEELVGFYLRRKIQHKSLPIELIKQVDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSQGKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLSSSDSPPPPPKKPSASSDKTLPPTDSWAICRIFKKTNSMSMAQKALSHSWITQLPESMVSDILLTNSHPAEIGCSNNFSASYSNNTQVSNGDVVVADTFMFSTFDQSPGGSGGVYNMGFEGPNHHQFSSFSSVSVAEDTQGSSNISSSATVADAIGFPFSLPPIPNDANWKANILPWDSPPCPTDISTTTYSNSTTNRCCT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1984 344 ProSiteProfiles NAC domain profile. 14 178 IPR003441 GO:0003677|GO:0006355
Sto8g1984 344 Gene3D NAC domain 23 183 IPR036093 GO:0003677|GO:0006355
Sto8g1984 344 SUPERFAMILY NAC domain 13 178 IPR036093 GO:0003677|GO:0006355
Sto8g1984 344 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Sto8g1984 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 225 - -
Sto8g1984 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 219 337 - -
Sto8g1984 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 225 - -
Sto8g1984 344 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 219 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1984 Sto-Chr8 12848102 12849319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1984 2 194 NAC Transcription Factor Family AT5G39820 71.000 9.96e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto8g1984 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1984 - - gmx:100778120 385.185