Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1980 ATGGCGGAGGGTGCAGAAGCTAATAAGGCATTGCCTGaggcagagaagaagaaggaacagAGTTTACCCTTTTACCAGCTCTTCTCTTTTGCGGACAAGTACGACTACTTCCTCATGATCTCGGGAAGCTTAGGAGCTATCGTCCATGGCTCATCCATGCctgttttcttccttcttttcggTCAAATGGTTAATGGGTTTGGCAAGAACCAGATGGATTTGAACAAAATGACCCATGAAGTATCAAAGTACGCTCTGTATTTTGTGTACCTGGGTCTCATCGTCTGCATATCATCCTATGCTGAAATTGCGTGCTGGATGTACACTGGGGAGAGACAAGTCAGCACGTTGAGGAAGAAGTACTTGGAGGCTGTGCTGAAACAGGACGTTGGGTTCTTTGACACCGACGCTAGAACAGGGGATATTGTGTTTAGTGTCTCCACTGATACTCTGCTTGTTCAAGATGCTATCAGCGAGAAGGTAGGGAACTTCATACATTATCTCTCCACTTTTCTGGCGGGACTAGTGGTTGGTTTTGTGTCGGCATGGAGGCTGGCGCTTCTAAGTGTGGCAGTAATTCCAGGCATTGCTTTTGCCGGTGGCTTGTATGCTTACACCCTCACAGGCCTCACTTCAAAGACTCGTCAATCCTATGCCAATGCTGGTATCATCGCCGAGCAGGCCATTGCTCAAGTTCGAACTGTTTACTCATACGTTGGTGAGGCTAAGGCCCTTAATTCTTATTCTGATGCGATTCAAAACACACTGAAGCTTGGATACAAAGCTGGAATGGCCAAAGGTTTGGGCCTAGGATGCACTTATGGCATAGCATGCATGTCCTGGGCTTTGGTGTTTTGGTATGCTGGTGTGTTTATCAGAAATGGACAGACCGACGGAGGCAAGGCTTTCACTGCTATTTTCTCTGCCATTGTTGGTGGCATGAGTTTGGGTCAGtcattttcaaatttagggGCTTTCAGTAAAGGAAAAGCAGCTGGATACAAATTGATGGAGATAATCAAGCAGAAACCCACCATAGTAGAAGACCCGTCAGATGGGAAGTGCTTGCCAGAGGTTAATGGAAACATTGAGTTTAAGAATGTTACTTTCAGCTATCCATCGAGGCCAGATGTGATCATCTTTCGCAATTTCTCCATCTTTTTCCCTGCTGGGAAAACTGTGGCCGTTGTTGGTGGTAGTGGGTCAGGAAAAAGCACTGTGGTTTCTTTGATAGAAAGGTTCTATGATCCTAATGAAGGGCAGGTTTTACTGGATAACGTGGACATAAAGACACTAGAATTGAAATGGCTACGTGGTCAAATTGGGCTTGTGAATCAAGAACCCGCACTCTTTGCAACTACCATACTCGAGAACATCCTCTATGGAAAGCCTGATGCAACCATGGCTGAAGTAGAAGCTGCTTCTTCTGCTGCAAATGCTCATAGCTTCATCACCTTGCTTCCCAATGGCTATAACACTCAGGTGGGAGAGCGAGGGGTTCAATTGTCGGGTGGCCAAAAACAGAGGATTGCAATAGCCAGAGCAATGCTGAAGAACCCCAAGATCCTTCTTTTAGATGAAGCAACCAGTGCCCTCGATGCAGGCTCAGAGAGCATTGTGCAAGAAGCACTAGACCGTCTCATGGTGGGACGTACAACTGTAGTTGTGGCCCATCGCTTATCAACCATAAGAAATGTTGATTCCATTGCGGTTATACAACAAGGGCAAGTTGTGGAGACAGGAACCCATGAAGAGCTGATTTCCAAACCAGGAGGGACCTATGCTTCACTAATTCGGTTCCAAGAAATGGTGGGAAACAGAGATTTGTCAAACCCGTCGACTCGCCGGACTCGGTCGTCGCGGCTGAGCCACTCGCTTTCAACCAAGTCCCTGAGCCTCCGGTCAGGGAGCTTGAGGAACCTGAGTTATCAGTACAGCACTGGGGCGGATGGTCGGATTGAGATGATATCAAATGCTGAAACGGAGAAGAAGAATCCAGCTCCTGATGGGTATTTCTTGCGCTTGCTCAAGCTGAATGCACCGGAATGGCCTTACTCTATAATGGGAGCTGTAGGGTCTGTTCTTTCTGGGTTTATTGGGCCAACTTTTGCCATTGTGATGAGCAATATGATAGAGGTGTTTTACTATAAGAATTATGCTTCGATGGAGAGGAAGACTAAGGAGTATGTTTTCATATACATTGGAGCTGGTCTCTATGCTGTGGGTGCATATTTGATACAGCATTACTTCTTTAGCATCATGGGAGAAAATCTGACTACAAGGGTTAGAAGAATGATGCTTGCGGCAATATTGAGGAATGAAGTTGGGTGGTTCGATGAAGAGGAGCACAATTCAAGTTTGGTGGCAGCTAGGCTTGCGACGGATGCTGGTGATGTAAAGTCTGCAATTGCTGAGAGGATCTCAGTGATTCTGCAGAACATGACGTCTCTGCTAACTTCATTTATAGTTGCATTCATTGTGGAATGGAGGGTTTCTTTGCTCATCCTCGCAACTTTCCCTCTACTTGTTCTAGCCAATTTTGCCCAGCAACTATCTCTGAAAGGGTTCGCCGGAGACACAGCCAAGGCACATGCAAAGACCAGCATGATCGCCGGAGAAGGAGTAAGCAACATCCGTACAGTCGCTGCATTCAACGCACAGAATAAAATCTTATCCCTCTTCTGCCACGAGCTCCGTCTCCCCCAGCGCCGGAGTCTCCGCCGCAGCCAAATCTCCGGCCTCCTCTTTGGCCTCTCCCAGCTCGCCCTCTACGCCTCCGAAGCTCTCATTCTCTGGTACGGCGCCCACCTCGTCCACAAAGGCGCCTCCACCTTCTCCAAAGTTATCAAAGTCTTCGTAGTCCTTGTCATCACCGCCAATTCCGTCGCAGAAACCGTCAGCCTCGCTCCGGAGATCATCCGAGGCGGGGAAGCCGTCGGCTCTGTTTTCTCAATTCTCGATCGCTCCACCAAGATCGACCCGGACGACCCGGATGCCGAACCGGTGGAGTCGATCCGCGGCGAGATTGAGCTGAGGCATGTGGATTTCGCATACCCATCACGCCCAGACGTGATGGTGTTCAAAGATTTCTCTCTCAGAATCCGATCAGGACAGAGCCAAGCTCTGGTGGGTGCAAGTGGGTCAGGCAAGAGCTCAGTCATCGCATTAATCGAACGCTTCTACGACCCCGTCGCGGGAAAAGTAATGATAGACGGAAAAGACATTCGGAGATTGAATCTGAAGTCGCTAAGACTCAAAATTGGGTTAGTCCAACAAGAGCCTGCTCTGTTCGCAGCGAGCATTTTCGATAACATATCCTACGGGAAAGAAGGAGCCACGGAAGCGGAGGTGATAGAGGCAGCACGTGCGGCGAACGTGCACACATTCGTGAGTAGTCTACCGGAGGGATACAACACACCGGTGGGGGAAAGAGGGGTTCAGCTATCGGGTGGACAAAAACAGAGGATCGCCATAGCCAGAGCTGTTCTGAAGGACCCTGCGATACTTCTACTAGACGAGGCCACGAGTGCGCTTGATGCGGAGTCAGAGTGTGTGCTTCAGGAAGCATTGGAGAGGCTGATGAGGGGTCGAACCACGGTGCTTGTGGCTCACCGTTTGTCAACCATTAGAGGGGTGGATTGCATTGGGGTGGTGCAAGATGGGCGCATTTTGGAACAGGGGAGCCATAACGAACTGGTGAGTCGACCAGAGGGGGCGTATTCGAGACTCTTGCGGCTGCAATACCATCACATATGA 3756 0.4848 MAEGAEANKALPEAEKKKEQSLPFYQLFSFADKYDYFLMISGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLNKMTHEVSKYALYFVYLGLIVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKTRQSYANAGIIAEQAIAQVRTVYSYVGEAKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSDGKCLPEVNGNIEFKNVTFSYPSRPDVIIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLELKWLRGQIGLVNQEPALFATTILENILYGKPDATMAEVEAASSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELISKPGGTYASLIRFQEMVGNRDLSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETEKKNPAPDGYFLRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYKNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAGDVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRLPQRRSLRRSQISGLLFGLSQLALYASEALILWYGAHLVHKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTKIDPDDPDAEPVESIRGEIELRHVDFAYPSRPDVMVFKDFSLRIRSGQSQALVGASGSGKSSVIALIERFYDPVAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNISYGKEGATEAEVIEAARAANVHTFVSSLPEGYNTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRILEQGSHNELVSRPEGAYSRLLRLQYHHI 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1980 1251 Gene3D - 353 602 IPR027417 -
Sto8g1980 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1247 IPR027417 -
Sto8g1980 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Sto8g1980 1251 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Sto8g1980 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1249 IPR039421 -
Sto8g1980 1251 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Sto8g1980 1251 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Sto8g1980 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1980 1251 Gene3D ABC transporter type 1, transmembrane domain 26 977 IPR036640 GO:0005524|GO:0016021
Sto8g1980 1251 Gene3D - 999 1250 IPR027417 -
Sto8g1980 1251 SMART AAA_5 390 591 IPR003593 -
Sto8g1980 1251 SMART AAA_5 1036 1222 IPR003593 -
Sto8g1980 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Sto8g1980 1251 Pfam ABC transporter transmembrane region 44 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1980 1251 Pfam ABC transporter transmembrane region 687 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1980 1251 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1249 - -
Sto8g1980 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1980 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 601 IPR027417 -
Sto8g1980 1251 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Sto8g1980 1251 SUPERFAMILY ABC transporter transmembrane region 27 350 IPR036640 GO:0005524|GO:0016021
Sto8g1980 1251 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
Sto8g1980 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Sto8g1980 1251 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Sto8g1980 1251 MobiDBLite consensus disorder prediction 607 626 - -
Sto8g1980 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1245 IPR003439 GO:0005524
Sto8g1980 1251 SUPERFAMILY ABC transporter transmembrane region 668 994 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1980 Sto-Chr8 12809468 12815606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1980 13 1247 Calmodulin-binding Proteins AT2G36910 53.711 0.0 1352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1980 8 12809468 12815606 Sto8g1980 8 12809468 12815606 ECH