Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1978 atgtcAAGCAGAAGGTCCAGGCAGCAGTCGTCGTCGTCATCTGCAAGGATCTCCGATGACCAAATCATCGAACTTGTTTCCAAATTGCGTCAACTTGTGCCGGAGATTCGCGATAGGCGTCGCTCCGACAAGGTATCTGCATCAAAGGTTCTACAAGAGACGTGCAACTACATCAGAAGCTTAAACAGACAAGTGGATGATTTAAGCCAGCGACTCTCTCAGCTGTTGGCCACAATTGATGCTGATAGCGCTGAGGCTGCCATCATTAGGAgcctaattaataactaa 288 0.4549 MSSRRSRQQSSSSSARISDDQIIELVSKLRQLVPEIRDRRRSDKVSASKVLQETCNYIRSLNRQVDDLSQRLSQLLATIDADSAEAAIIRSLINN 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1978 95 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Sto8g1978 95 Gene3D - 1 90 IPR036638 GO:0046983
Sto8g1978 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Sto8g1978 95 CDD bHLH_AtPRE_like 16 78 - -
Sto8g1978 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 80 IPR036638 GO:0046983
Sto8g1978 95 Pfam Helix-loop-helix DNA-binding domain 24 61 IPR011598 GO:0046983
Sto8g1978 95 PANTHER TRANSCRIPTION REGULATOR 1 93 - -
Sto8g1978 95 Coils Coil 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1978 Sto-Chr8 12792304 12793444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1978 14 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 4.50e-38 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g1978 HLH 7.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1978 - - gmx:100794486 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1978 8 12792304 12793444 Sto3g1524 3 11264336 11266149 ECH
Sto8g1978 8 12792304 12793444 Sto8g1978 8 12792304 12793444 ECH
Sto11g0976 11 10135204 10135574 Sto8g1978 8 12792304 12793444 ECH