Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1975 ATGGCCTTCCCACCAGATCATGAAGAAAGCTTCTTCGTGTTTGAGACGAGCCATCAAGACCATGATCTTACCATCCCTAATAATTCAACATCAACCTTATTCCACTTTGAGAGTACCGGACTAGGACTACCCTGCAGCAGCTTGAACTTGAAGCGATCCATGTCATTTTCAGGCATCCAAAACAAGTACAATCATCGTCATGAAGAGgaattagaagaagaagaagaagggtgggGGTGGGATCATATGCATGAAGAAGGATCCAAGAAGAAGAGGCTCACCACAGAGCAAGTGAGGACGCTTGAGAAGAGCTTCGAGGCAGGGAACAAGCTGGAAGGAGACAGGAAAATGGAGCTAGCCAAGTGTCTTGGGCTTGAGCCAAGACAGGTCGCCATATGGTTCCAAAATAGAAGGGCCAGATGGAAAACCAAGCAGCTCGAGAAGGAATACGAAGCCCTCAAGCGCCACTTTCATTCACTCAACTCTCAAAACCGTGCCCTTAAGGCTCACAACCTCCAACTACACgctcagTTAGAAGCTCTAAAAGGTAGAGATTGCAGTGAAGATGAGATAGGTGGAGGTGCAGGTGGAAGAAGAATATTAATGGAAGGGCAgctaattaagaaagaaaatagagaagaaATATGTTGGAGCAATTGCAATGGAAGTGACAATAATAGCTCCCATGTCAACAACACCTCCGGATCCACACCACAAGTTCTAAGCACTATTAATCCTGCTCTTCCCTCCAACCCAACTCAGCTTTTTCAGTGCTCATCAACAATGTCATCACAACCTCAAGATCATACCTTCTCCAACATGTTTCATGGAATTCAAGACCACCACAATTTCTGGCCTAGCTCCCCAGATCACCACCACCACTTTCATCATTGA 894 0.4295 MAFPPDHEESFFVFETSHQDHDLTIPNNSTSTLFHFESTGLGLPCSSLNLKRSMSFSGIQNKYNHRHEEELEEEEEGWGWDHMHEEGSKKKRLTTEQVRTLEKSFEAGNKLEGDRKMELAKCLGLEPRQVAIWFQNRRARWKTKQLEKEYEALKRHFHSLNSQNRALKAHNLQLHAQLEALKGRDCSEDEIGGGAGGRRILMEGQLIKKENREEICWSNCNGSDNNSSHVNNTSGSTPQVLSTINPALPSNPTQLFQCSSTMSSQPQDHTFSNMFHGIQDHHNFWPSSPDHHHHFHH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1975 297 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Sto8g1975 297 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Sto8g1975 297 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Sto8g1975 297 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Sto8g1975 297 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Sto8g1975 297 Gene3D - 82 153 - -
Sto8g1975 297 Coils Coil 136 163 - -
Sto8g1975 297 CDD homeodomain 89 145 IPR001356 GO:0003677
Sto8g1975 297 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Sto8g1975 297 SMART HOX_1 87 148 IPR001356 GO:0003677
Sto8g1975 297 Pfam Homeobox associated leucine zipper 144 183 IPR003106 GO:0006355|GO:0043565
Sto8g1975 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 296 - -
Sto8g1975 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 296 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1975 Sto-Chr8 12757192 12758378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1975 1 280 Homeobox Transcription Factor Family AT5G15150 40.940 1.89e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto8g1975 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1975 K09338 - gmx:100790803 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1975 8 12757192 12758378 Sto8g1975 8 12757192 12758378 ECH