Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1960 atggagatgatgatgataaagagtAGTGAAGAGAGCAAAAGAAGGAGCCAAATGTACATGGCAGAAGGCAGTACTACTGAGTTCCAAAGTGGAACTCGCTGTGTGAAGAGGCGACGAAGAGAGGCTTCTGGAGTTGCAATTAATTGcactgataataataataataacaataataataatcaaagtGATGAGAAGCTACAAGTGGATCAAAATTCAAGTCCCAACACTGTGAAAAGAAGCTCGAGATTTCGTGGCGTGAGCAGACATAGGTGGACTGGTCGATTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACGTCACgcagaagaagaaagggaagcaaGGGGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTGGCTGCACTTAAATACTGGGGAACCTCAACGTTCACTAATTTTCCGATATCAGATTACAAGAATGAGATAGAAATAATGCAGACTATGACCAAAGAGGAGTACTTGGCCACTTTGAGAAGAAAGAGCAGTGGCTTTTCAAGAGGCGTATCCAAGTATAGGGGTGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGGATAGGGAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACTTACAGCACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTATAGAGGGATCCATGCTGTAACCAACTTTGATTTGAGTACTTACATAAGATGGTTGAAGCCTGCAAGAGAAAACATCCCAGAAGCAACACTTGAATCACAGGTGGTACAAGAGGCACAGACAGAGACATCACCATCTATCTATACTCCAATAGAGGAGAACAAATCCTTAGCCCTTcaaagtaattctctcactgATTACCTGAACTCCCCTAGATTGCAAGATGCCTTTGAAAGCAAAAACCCGCTAATCTCAGGCAACAAGTCATCTTCTCCGAGTGCACTCGGCCTTCTTCTTCGATCTTCGATATTCAGAGAATTAGTAAAAAAGAATTCTAACATGTCGGCAGACGAAACTGATGGGGAAGACACAAAGGATCAACAACTGGCTGGAGATGGTGAGTTGGGTGGGATCTTCTATGAAGGAATTGGCGATGTTCCATATGTCTGTGATCCCAACAGATACACCTTAGAGTTGCAAGAAAGAGATTTCCAGTCCCTTCTATGA 1191 0.4039 MEMMMIKSSEESKRRSQMYMAEGSTTEFQSGTRCVKRRRREASGVAINCTDNNNNNNNNNQSDEKLQVDQNSSPNTVKRSSRFRGVSRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYKNEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLKPARENIPEATLESQVVQEAQTETSPSIYTPIEENKSLALQSNSLTDYLNSPRLQDAFESKNPLISGNKSSSPSALGLLLRSSIFRELVKKNSNMSADETDGEDTKDQQLAGDGELGGIFYEGIGDVPYVCDPNRYTLELQERDFQSLL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1960 396 ProSiteProfiles AP2/ERF domain profile. 82 145 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 MobiDBLite consensus disorder prediction 1 84 - -
Sto8g1960 396 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 378 - -
Sto8g1960 396 SMART rav1_2 82 151 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 SMART rav1_2 181 245 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 ProSiteProfiles AP2/ERF domain profile. 181 239 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 PRINTS Ethylene responsive element binding protein signature 221 241 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 MobiDBLite consensus disorder prediction 46 81 - -
Sto8g1960 396 Gene3D AP2/ERF domain 81 147 IPR036955 GO:0003700|GO:0006355
Sto8g1960 396 Gene3D AP2/ERF domain 180 241 IPR036955 GO:0003700|GO:0006355
Sto8g1960 396 SUPERFAMILY DNA-binding domain 81 147 IPR016177 GO:0003677
Sto8g1960 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 378 - -
Sto8g1960 396 CDD AP2 81 147 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 SUPERFAMILY DNA-binding domain 180 241 IPR016177 GO:0003677
Sto8g1960 396 CDD AP2 180 241 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 MobiDBLite consensus disorder prediction 1 17 - -
Sto8g1960 396 Pfam AP2 domain 81 137 IPR001471 GO:0003700|GO:0006355
Sto8g1960 396 Pfam AP2 domain 180 231 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1960 Sto-Chr8 12671256 12673777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1960 78 278 AP2-EREBP Transcription Factor Family AT5G57390 58.411 5.55e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sto8g1960 AP2 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1960 - - gmx:100779867 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1960 8 12671256 12673777 Sto8g1960 8 12671256 12673777 ECH