Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1959 ATGGCAATGGGTAATGATGGTGTAACCAAGGTTACCCTCATCTTCTTGGCAACCTTGGCCACCATTATTCCACGCCTTGAAGCCAATTTTAACTTCACCTCCGAAGaaattattaataacaataagGAACTCCTCCGCAGAGCAATTCTCGACGCCTATGAACCTGACCCTTACAATGTCACATCGGAATTCAATTTACACGTTCACAAGGCCATAGAAGAAGATGACCACATAAGCACAAGGAGGGCACTTAACggtcataaaaataaaagatacaaAGGACCATGCATGGCCACCAACCCAATAGACCGTTGCTGGCGCTGCAGACCAGACTGGGCCGCGGACCGCAAGCGGTTAGTGAGGTGCGTGAAAGGGTTCGGTAGGAAGACCACAGGAGGGCTAGCCGGGAGGATCTACGTCGTGACGGATCCTTCAGACAACGACTTGGTGAACCCCAAAATAGGAACACTCCGTTACGGCGTGATCCAAGACGAGCCATTGTGGATCATATTCCAACGCAGCATGGTGATCAATTTGCAGCAAGAATTGCTGGTGAGCTCCCACAAGACAATCGATGGGCGTGGAGCCAACGTGCAGATCACAGGGGGAGCCGGGATTTCTCTGTTCAAAGTGGAAAACGTGATCGTCCACAATCTTCGCATTCACCACATCGTGCCCAAGCCAGGTGGCTTGATTAGGTTCAACAGTAAATTCCCTCCCGGTTTCAGAACCAGAAGTGATGGGGATGCTATTTCCATCTTCAATTCCGCCAACATTTGGGTGGATCACATTTCCCTCTCCAATTGTGCGGATGGGCTTGTGGATGTCATCCAAAGCTCCACGGGCATTACAATCTCCAATTGCCATCTCACACACCACGACGATGTGATGTTGTTAGGAGGAAACGATTTGCACGTACAAGACAAGATCATGCAGGTTACGGTGGCCTTTAACCACTTCGGCCAGGGGTTGATACAGAGGATGCCCAGAACCAGGTTCGGCTTCGTGCATGTGGTCAATAACGATTATACACATTGGCTCAAGTACGCTATTGGAGGAAGCTCCGGTCCCACCATTATGAGCCAAGGGAACCGGTTCATTGCTCCGGATGACCAGCCGTTTAAGGAGATCACACATAGGGACTACGCGGTGCCGGCTGTGTGGAGCCAGTGGAAATGGACGACGGAGATGGATTTGTTCATGAATGGAGCCAGATTTGTGGCCTCTGGGGGACCACCTAGGCCTCCTCCAACCGTAATAGGGGGTCTCATCAAACCCAAGGATGGGACTTTTGTGACCAGACTTACCAGGTTTACTGGTGCACTTCAATGCATTGTGGGAAGGCCTTGTTAG 1353 0.4967 MAMGNDGVTKVTLIFLATLATIIPRLEANFNFTSEEIINNNKELLRRAILDAYEPDPYNVTSEFNLHVHKAIEEDDHISTRRALNGHKNKRYKGPCMATNPIDRCWRCRPDWAADRKRLVRCVKGFGRKTTGGLAGRIYVVTDPSDNDLVNPKIGTLRYGVIQDEPLWIIFQRSMVINLQQELLVSSHKTIDGRGANVQITGGAGISLFKVENVIVHNLRIHHIVPKPGGLIRFNSKFPPGFRTRSDGDAISIFNSANIWVDHISLSNCADGLVDVIQSSTGITISNCHLTHHDDVMLLGGNDLHVQDKIMQVTVAFNHFGQGLIQRMPRTRFGFVHVVNNDYTHWLKYAIGGSSGPTIMSQGNRFIAPDDQPFKEITHRDYAVPAVWSQWKWTTEMDLFMNGARFVASGGPPRPPPTVIGGLIKPKDGTFVTRLTRFTGALQCIVGRPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1959 450 SMART amb_all 174 372 IPR002022 -
Sto8g1959 450 PANTHER PECTATE LYASE 18-RELATED 8 450 IPR045032 GO:0030570
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Sto8g1959 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Sto8g1959 450 SUPERFAMILY Pectin lyase-like 68 413 IPR011050 -
Sto8g1959 450 Pfam Pectate lyase, N terminus 46 84 IPR007524 GO:0030570
Sto8g1959 450 Pfam Pectate lyase 182 366 IPR002022 -
Sto8g1959 450 PANTHER PECTATE LYASE 8 450 - -
Sto8g1959 450 Gene3D - 99 443 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1959 Sto-Chr8 12665878 12667319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1959 13 450 Polysaccharide Lyase AT3G01270 52.564 1.58e-172 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1959 K01728 - zju:107415573 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1959 8 12665878 12667319 Sto8g1959 8 12665878 12667319 ECH
Sto8g1959 8 12665878 12667319 Sto13g1720 13 24543710 24549529 ECH