Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1958 ATGGCCACAAACCCAATAGACCGTTGCTGGCGGTGCAGACCGGACTGGGCCGCGGACCGCAAGCTATTAGCCCGCTGTGTGAAAGGCTTCGGCCGGAAGACCACGGGCGGGCTAGCCGGGCGGATCTACGTCGTGACGGATCCTTCAGACAACGACTTGGTGAACCCCAAAATTGGAACACTCCGTTTCGGCGTGATCCAAGACGAGCCATTGTGGATCATATTCGAACGGAGCATGGTGATCAATTTGCAGCAAGAATTGCTGGTGAACTCTCACAAGACCATCGATGGTCGTGGAGCCAACGTGCAGATCACAGGGGGAGCCGGGATTTCTATGTTCAAAGTGGAAAACGTGATCATCCACAATCTTCGTATTCACGACATCGTACCCAAGCCAGGTGGTTTGATTCGGTACAATAGTAAATTACCCCCGGGGACGAGAACGAGGAGTGATGGGGATGCTATTTCCATCTTCAATTCCGCCAACATTTGGGTGGATCACATTTCCCTCTCCAATTGCGCAGATGGGCTTGTGGATGTAATAGAAAGCTCCACGGGCGTTACAATTTCGAATTGCCATCTCACACATCACAACGATGTGATGTTGTTAGGAGGAAGCGATTTGCACGTACAGGACAAGATCATGCAGGTGACGGTGGCGTTTAACCACTTCGGGCAGGGGTTGATACAGAGGATGCCCAGAGCTAGGTTCGGGTTCGTGCATGTGGTGAATAACGATTATACACATTGGCTCAAGTACGCGATTGGAGGGAGCTCCGGTCCGACCATAATGAGCCAAGGGAACCGGTTCATTGCTCCGGATGACCAGCCGTTTAAGGAGATCACACATAGGGACTACGCGGCGCCGGCGGTGTGGAGCACGTGGAAATGGACGTCGGAGATGGATTTGTTCATGAATGGAGCGAGGTTTGTGGGGTCTGGGGGACCACCAATGCCTCCTCCAATACTAAGAAACGATCTGATAAAGCCCAAAGAAGGGACTTTTGTGACAAGACTTACCAGGTTTACTGGTGCTCTTGCATGCTTTGTGGGCAAGCCTTGTTAA 1065 0.5202 MATNPIDRCWRCRPDWAADRKLLARCVKGFGRKTTGGLAGRIYVVTDPSDNDLVNPKIGTLRFGVIQDEPLWIIFERSMVINLQQELLVNSHKTIDGRGANVQITGGAGISMFKVENVIIHNLRIHDIVPKPGGLIRYNSKLPPGTRTRSDGDAISIFNSANIWVDHISLSNCADGLVDVIESSTGVTISNCHLTHHNDVMLLGGSDLHVQDKIMQVTVAFNHFGQGLIQRMPRARFGFVHVVNNDYTHWLKYAIGGSSGPTIMSQGNRFIAPDDQPFKEITHRDYAAPAVWSTWKWTSEMDLFMNGARFVGSGGPPMPPPILRNDLIKPKEGTFVTRLTRFTGALACFVGKPC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 26 43 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 50 75 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 151 172 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 253 272 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 295 319 IPR018082 -
Sto8g1958 354 PRINTS Pollen allergen Amb family signature 325 348 IPR018082 -
Sto8g1958 354 SMART amb_all 78 276 IPR002022 -
Sto8g1958 354 Gene3D - 3 347 IPR012334 -
Sto8g1958 354 SUPERFAMILY Pectin lyase-like 4 345 IPR011050 -
Sto8g1958 354 PANTHER PECTATE LYASE 1 354 - -
Sto8g1958 354 PANTHER PECTATE LYASE 18-RELATED 1 354 IPR045032 GO:0030570
Sto8g1958 354 Pfam Pectate lyase 86 270 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1958 Sto-Chr8 12660626 12661690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1958 2 354 Polysaccharide Lyase AT5G15110 62.429 1.86e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1958 K01728 - gmx:100810615 506.523