Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1930 ATGGGTGGGGATAACAAGGAAACAAACGTGGCCGCCGTGGCCGggaataataagaagaagaagaatgggtcTGTCCGATCCATTTTTATGCATGCCGATAGCCTAGATTGGTTTCTCATGATCCTCGGTGTCACTGGGTCCATTTTCGACGGATTCTCCACCCCTCTCGTCCTCTTCGTCACTAGCCGCTTGATGAACAATATTGGTGGTGGCCCTTCCGATCACTCCTCCTTCCTCACTAACATCAATAAgAATGCAGTGGTCTTGCTATATATGGCTTCTGGGTCTTTCCTTGCTTGCTTCCTGGAGGGATATTGCTGGACCAGAACGGGAGAGAGACAAGCCGCGAGAATGAGAGCCCGGTACTTAAAAGCCGTGCTCAGACAAGAAGTGGCTTACTTCGATCTGCACGTGACCAGCACGTCCGAGGTCATCACCAGCGTCTCCAACGACAGCCTCGTCATTCAAGACGCTCTTAGTGAAAAGGTTCCGAACTTCTTGATGAACGTGTTTATGTTCATTGGGAGCTACATAGCGGCTTTTGCAATGTTGTGGAGGCTGGCTATTGTGGGGTTCCCTTTCGTGGTCCTTCTGGTGATCCCTGGTTTGATCTACGGAAGAACTCTAATGGGATTGGCTAAGAAAATAAGAGAAGAGTATAATCAAGCGGGTACGATAGCAGAGCAAGCGATATCTTCCATAAGGACAGTGTATTCCTTTGTGGGAGAAGGCAAGACCATAGCCGCCTTCTCTGATGCTCTTCAAGGCTCTGTGAAGTTAGGACTTAAGCAAGGCTTGGCTAAAGGCTTAGCCATCGGGAGCAACGGCATCGTTTTTGGCATATGGTCCTTTATGTCCTATTACGGCAGTAGGCTCGTCATGTACCATGGCGCTCAAGGCGGTACCGTTTTCGCCGTTGGTGCCTCCATTGCTGTTGGCGGATTGTCTTTAGGAGCTGCTTTATCAAACATGAAGTACTTTTCAGATGCAAGTTCAGCAGGGGAACGAATAATGGAGGTGATAAAAAGAGTCCCCAAGATCGATTCTGAGAACATGGAAGGTGAGATTCTAGAGAGCGTTTCTGGGGAAGTGGAGTTCGACGGCATAGACTTCGCATACCCATCGAGGCCAGACAGCATTATCCTAAAGGATTTCTGCTTGAAGATTCCGGCGGGGAGGACGGTGGCGCTGGTGGGTGGAAGTGGGTCGGGAAAATCGACGGTGATCTCGCTGTTGCAGAGATTCTATGACCCACTTGTGGGAGAGATAAGGGTGGATGGGTTAGCCATACAGAGGATGCAGCTCAAGTGGCTAAGGTCACAAATGGGTCTGGTTAGCCAGGAACCGGCTCTGTTCGCGACCAGCATTAAGGAGAATATAGTGTTTGGAAAAGAGGATGCCACTATGGAAGAGGTTGTGGAAGCTGCTAAAGCTTCCAATGCTCATAACTTCATTTCACTGTTGCCTCAGGGATATGATACCCAGGTTGGTGAAAGGGGAGTTCAGATGTCAGGAGGACAAAAACAGAGGATCGCTATAGCACGAGCAATTATAAAGAAACCAAGACTGCTTCTGCTAGATGAAGCAACCAGCGCACTAGACTCCGAATCCGAACGTGTCGTTCAAGAAGCTCTAGACAAAGCAGCCGTGGGTcgcaccaccatcatcatcgcTCACCGCTTATCCACCATTCGAAACGCCGACGTCATTGCCGTCGTACAGAGCGGAAAGATCATGGAGATGGGCCCACACGACGACCTCATCCAAAACGACGACGGCCTTTACACCTCCCTGGTCCGTCTCCAACAAACAGAACAATCCAAAACGCAAGAGGATCACAATGTCGTCGTCGTCTCTGCAGCCGCCCCGACGACGTCGTCGTCGATTTCAAACAGAGACGCGAATAACACCAGCAGTCGCAGGCTCTCCTTGGTGAGTCGTTCTAGCTCTGCCAGTTCAATGGCTCGAAACGCAGGCGTTTCGGGTGGCGAAGAAGATAACGACGGGAATTATTATCACGTTGTGGAAGATCAGAAATTCCCTGTCCCGTCGTTTCGGAGATTGTTGGCTCTGAATTTGCCGGAATGGAAGCAGGCGACGTTGGGGTGTGTGAGTGCGATGCTGTTCGGTGCGGTTCAGCCATTGTACGCGTTCGCTATGGGATCTATGATATCTGTGTATTTTTTGACGGATCATGAGGAGATCAAAAGGAAGACGAGGGTTTATGCTCTTTGGTTTTTGGGGTTGGCTGTGTTCTCTTTGCTTATTAATATAAGCCAGCATTATAATTTTGCTTATATGGGTGAGTATTTGACCAAGAGGATTAGGGAGAGAATGCTTTCGAAGATACTCACGTTTGAAATTGGATGGTTCGATCAGGATGAGAATTCCAGTGGTGCTGTTTGCTCTAGACTTGCCAAAGACGCCAATGTGGTGAGGTCTTTGGTAGGAGATAGATCTGCCTTACTTGTACAAACATTCTCAGCAGTGATAATAGCCTGCACAATGGGTTTGGTCATAGCATGGAGGCTAGCCATTGTGATGATAGCCGTCCAACCCCTAATCATTCTTTGCTTCTACACAAGACGCGTCCTACTTAAGAACATGTCCAACAAGGCCATTAAAGCTCAAGACCAAAGCAGCAAGCTCGCTGCCGAAGCTGTTTCCAATCTCCGAACTATCACCGCCTTCTCTTCCCAAGACCGCATGCTCAAAATGCTCGAAAAGGCCCAGGAAGGCCCAAGAAAAGAGAGCATCCGTCAGTCCTGGTACGCAGGTATTGGGCTCGCATGTTCCCAGGGCCTCATGTTCTGTACTTGGGCTTTGGACTTTTGGTACGGCGGCAAGCTTATCTTCCAAGGCTACATCACTGCCAAAGCACTGTTTGAGACCTTCATGGTTCTGGTTAGCACAGGCCGTGTTATTGCTGATGCTGGAAGCATGACTTCTGACCTCGCTAAAGGATCTGACTCCGTGGGCTCTGTTTTCGCGGTTTTAGATAGGTACACGAAGATTGAGCCCGAAGACCTAGATGGGTACAAGCCCGACAAGATAATGGGCCAAATAGAGCTTCGTGATGTCCATTTCGCGTACCCAGCCAGGCCCAATGTGATGATCTTTCAAGGTTTCTCGCTCAAGATTGACGCTGGAAAATCAACGGCATTGGTGGGCCAAAGTGGCTCGGGTAAATCAACTATTATTGGTTTAATAGATAGATTTTATGACCCGCTCAAAGGGATAGTGACCATAGATGATAAAGATATAAAGTCGTATCACCTTAGGTCATTGAGAAAACACATAGCGTTAGTTAGCCAAGAGCCCACCTTATTCAGTGGGACCATAAGGGAGAACATAGCATACGGAGCGTCGTATAAGGTTGACGAAGCAGAGATCATAGAGGCCGCTCGAGCAGCCAACGCTCATGATTTCATTGGAGGCTTGAAGGATGGATACGACACGTCGTGTGGGAATAAAGGCATTCAGCTTTCGGGTGGTCAAAAGCAGAGGATAGCAATAGCAAGAGCTATTCTGAGGAACCCATCAATATTGCTATTAGATGAGGCAACGAGTGCGCTTGATAGCCAATCGGAGAAAGTGGTGCAAGACGCGCTGGAGCGCGTGATGGTGGGGAGAACAAGTGTGGTGGTGGCCCACAGATTGAGCACCATACAGAATTGTGATCTAATTGCTGTGTTGGATAAAGGGAAGGTGGTAGAGAAAGGGACCCACTCGTCCTTGTTGACAAAGGGACCAAGGGGAGCTTATTACTCTTTGGTGAGTCTTCAAAGAAGACCAGCCAATTCTGACCGTTCGATTCACTAG 3822 0.4825 MGGDNKETNVAAVAGNNKKKKNGSVRSIFMHADSLDWFLMILGVTGSIFDGFSTPLVLFVTSRLMNNIGGGPSDHSSFLTNINKNAVVLLYMASGSFLACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNVFMFIGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGRTLMGLAKKIREEYNQAGTIAEQAISSIRTVYSFVGEGKTIAAFSDALQGSVKLGLKQGLAKGLAIGSNGIVFGIWSFMSYYGSRLVMYHGAQGGTVFAVGASIAVGGLSLGAALSNMKYFSDASSAGERIMEVIKRVPKIDSENMEGEILESVSGEVEFDGIDFAYPSRPDSIILKDFCLKIPAGRTVALVGGSGSGKSTVISLLQRFYDPLVGEIRVDGLAIQRMQLKWLRSQMGLVSQEPALFATSIKENIVFGKEDATMEEVVEAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRLLLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGPHDDLIQNDDGLYTSLVRLQQTEQSKTQEDHNVVVVSAAAPTTSSSISNRDANNTSSRRLSLVSRSSSASSMARNAGVSGGEEDNDGNYYHVVEDQKFPVPSFRRLLALNLPEWKQATLGCVSAMLFGAVQPLYAFAMGSMISVYFLTDHEEIKRKTRVYALWFLGLAVFSLLINISQHYNFAYMGEYLTKRIRERMLSKILTFEIGWFDQDENSSGAVCSRLAKDANVVRSLVGDRSALLVQTFSAVIIACTMGLVIAWRLAIVMIAVQPLIILCFYTRRVLLKNMSNKAIKAQDQSSKLAAEAVSNLRTITAFSSQDRMLKMLEKAQEGPRKESIRQSWYAGIGLACSQGLMFCTWALDFWYGGKLIFQGYITAKALFETFMVLVSTGRVIADAGSMTSDLAKGSDSVGSVFAVLDRYTKIEPEDLDGYKPDKIMGQIELRDVHFAYPARPNVMIFQGFSLKIDAGKSTALVGQSGSGKSTIIGLIDRFYDPLKGIVTIDDKDIKSYHLRSLRKHIALVSQEPTLFSGTIRENIAYGASYKVDEAEIIEAARAANAHDFIGGLKDGYDTSCGNKGIQLSGGQKQRIAIARAILRNPSILLLDEATSALDSQSEKVVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLTKGPRGAYYSLVSLQRRPANSDRSIH 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1930 1273 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 25 1266 - -
Sto8g1930 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1015 1262 IPR027417 -
Sto8g1930 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1930 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 25 1266 IPR039421 -
Sto8g1930 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Sto8g1930 1273 MobiDBLite consensus disorder prediction 626 667 - -
Sto8g1930 1273 SUPERFAMILY ABC transporter transmembrane region 28 348 IPR036640 GO:0005524|GO:0016021
Sto8g1930 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 689 1005 - -
Sto8g1930 1273 ProSitePatterns ABC transporters family signature. 1162 1176 IPR017871 GO:0005524
Sto8g1930 1273 MobiDBLite consensus disorder prediction 626 657 - -
Sto8g1930 1273 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Sto8g1930 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Sto8g1930 1273 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Sto8g1930 1273 Pfam ABC transporter 1041 1190 IPR003439 GO:0005524
Sto8g1930 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1930 1273 Coils Coil 866 886 - -
Sto8g1930 1273 SMART AAA_5 391 577 IPR003593 -
Sto8g1930 1273 SMART AAA_5 1049 1242 IPR003593 -
Sto8g1930 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Sto8g1930 1273 CDD ABC_MTABC3_MDL1_MDL2 1022 1262 - -
Sto8g1930 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1259 IPR003439 GO:0005524
Sto8g1930 1273 Pfam ABC transporter transmembrane region 40 306 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1930 1273 Pfam ABC transporter transmembrane region 701 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g1930 1273 SUPERFAMILY ABC transporter transmembrane region 681 1006 IPR036640 GO:0005524|GO:0016021
Sto8g1930 1273 Gene3D ABC transporter type 1, transmembrane domain 88 990 IPR036640 GO:0005524|GO:0016021
Sto8g1930 1273 Gene3D - 1012 1271 IPR027417 -
Sto8g1930 1273 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Sto8g1930 1273 Gene3D - 362 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1930 Sto-Chr8 12395106 12401916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1930 26 1263 Calmodulin-binding Proteins AT2G36910 44.703 0.0 1063