Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1912 ATGGAGTTTCAAGAAAGTGTGAAGTTGGTCTTCCACAGACCCATACACAAGAAATGGGTATCTCATAAACCAATGGAAGCAGACAAGTTCCCCTCCGACGCCGTCTCTTCTCCTCGGCGAAAATGGAAGATCTTCTACAGATCATCCTCCGCCATCCCTTCAAAAcaatccaaaccccaaaagaCCAAACAGCCCCCACCTGAAGAGTTCCTCTGTCCCATTTCGAGGACTCTCATGGCAGACCCCGTCATCGTCTCCTCCGGCCACACCTTCGAGCGTGTCTCCGTTCAAGCCTGTCGAAACCTAAACTACACACCTCTCCTCTCCGATGGCTCCACCCCTGATTTTTCCACTGTAATACCCAATCTAGCCCTCAAATCTGCCATCGCTAAATGGTGCCACAATCTCCCTCCCGACACACTTGATGCTAACTCCGCTGAGAACCTCGTCCGAACACTCATGGCGGCGACAATTCATAACGAAACAGAGTTGCAGCAAAAGGTAGTAGTAGTCACAGAGAAAGACCTAATTCGAGGTATGAAGGAAAATCCACCTGTGAATTTGAATCACGCAGCGACGGAAGTTGCTCCTCGACGACCAACCCATTTCTACTCTAGCTCCGACGAATCCGTATGTACCTCTGCTTCAACTCCGCCTCTTCAACTTTCGACTCGACCTAGCTGctattcttcttctccttcatctTCAGAAATCGACGTCATAACTCCAAGCTCACCCGAAGAGGAAGAAATCATGGCGAAGCTGAAGAGCTCACAAGTCTTCGAGATCGAAGAGGGCGTCGTTTCCTTACGAAAGCTCACGAAAAACAGAGAGGACACGAGGACCCATCTCTGTAGCCCTAGACTACTCTCGACCTTACGATCCTTAATCGTCTCGAAATATACCAACATTCAGGTGAACGCCGTGGCCGCCGTCGTGAATCTCTCATTGGAGAAAGTGAATAAGGTGAAGATGGTACGATCCGGCGTCGTTCCGCCGTTGATTGACGTGTTGAAGGGAGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCACTCTTCAGCTTAGCGTTAAACGACGACAACAAGACGGCGATCGGCGTGCTCGGCGCTCTTCCGCCGTTGCTCCACTTGCTCCGATCCGAGAGCGAGCGAACTCGGCACGACTCGGCTCTCGCACTGTACCACCTCTCACTCGTACAGAGTAACCGGACCAAATTGGTGAAACTCGGGTCGGTTCAGATTCTAATGGGTATGGTGAAGTCGGGTCAAATGATGGGTCGGGTTTTACTGATACTGTGCAATTTGGCCTCGTGTGGGGACGGGCGGGCTGCGATGATGGATGCGGGTGCAGTGGAGTGCTTGGTTGGGTTGTTGAATGGGAGCGAGTTGGGTTTTGGGTCGACCCGGGAAAGCTGCGTGGCAGTTTTGTATGCATTGAGTCATGGCGGGTTGAGGTTTAAAGCGGTGGCGAAGGAGGCCGGAGCGATGGAGGTGTTAAGAAAAGTGGAAAAGATGGGAAGTGAGAGGTcaagagagaaagtaaagagaaTAATGGAGATGTTGaaagtgaaggaagaagaagaggaggatgtGGATTGGGAGGAGCTTCTGGATTGCGGGTTTGGTAGCCGGAGTCGGGTTCGGTTGGGCGAGTCTACTGCTAACTCGTCCGAGTTTTAG 1683 0.4955 MEFQESVKLVFHRPIHKKWVSHKPMEADKFPSDAVSSPRRKWKIFYRSSSAIPSKQSKPQKTKQPPPEEFLCPISRTLMADPVIVSSGHTFERVSVQACRNLNYTPLLSDGSTPDFSTVIPNLALKSAIAKWCHNLPPDTLDANSAENLVRTLMAATIHNETELQQKVVVVTEKDLIRGMKENPPVNLNHAATEVAPRRPTHFYSSSDESVCTSASTPPLQLSTRPSCYSSSPSSSEIDVITPSSPEEEEIMAKLKSSQVFEIEEGVVSLRKLTKNREDTRTHLCSPRLLSTLRSLIVSKYTNIQVNAVAAVVNLSLEKVNKVKMVRSGVVPPLIDVLKGGSPEAQEHASGALFSLALNDDNKTAIGVLGALPPLLHLLRSESERTRHDSALALYHLSLVQSNRTKLVKLGSVQILMGMVKSGQMMGRVLLILCNLASCGDGRAAMMDAGAVECLVGLLNGSELGFGSTRESCVAVLYALSHGGLRFKAVAKEAGAMEVLRKVEKMGSERSREKVKRIMEMLKVKEEEEEDVDWEELLDCGFGSRSRVRLGESTANSSEF 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1912 560 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Sto8g1912 560 Pfam Armadillo/beta-catenin-like repeat 321 357 IPR000225 GO:0005515
Sto8g1912 560 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Sto8g1912 560 MobiDBLite consensus disorder prediction 206 242 - -
Sto8g1912 560 CDD RING-Ubox 71 105 - -
Sto8g1912 560 Coils Coil 508 528 - -
Sto8g1912 560 PANTHER U BOX DOMAIN-CONTAINING 39 552 - -
Sto8g1912 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 366 IPR000225 GO:0005515
Sto8g1912 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 143 IPR013083 -
Sto8g1912 560 Pfam U-box domain 67 134 IPR003613 GO:0004842|GO:0016567
Sto8g1912 560 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 552 - -
Sto8g1912 560 MobiDBLite consensus disorder prediction 206 244 - -
Sto8g1912 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 412 IPR000225 GO:0005515
Sto8g1912 560 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Sto8g1912 560 SUPERFAMILY ARM repeat 249 514 IPR016024 -
Sto8g1912 560 Gene3D - 247 524 IPR011989 -
Sto8g1912 560 SUPERFAMILY RING/U-box 60 135 - -
Sto8g1912 560 SMART arm_5 359 399 IPR000225 GO:0005515
Sto8g1912 560 SMART arm_5 318 358 IPR000225 GO:0005515
Sto8g1912 560 SMART arm_5 277 317 IPR000225 GO:0005515
Sto8g1912 560 SMART arm_5 439 482 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1912 Sto-Chr8 12274285 12275967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1912 62 560 U-box Gene Family AT5G40140 58.708 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1912 - - lja:Lj2g3v1020040.1 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1912 8 12274285 12275967 Sto8g1912 8 12274285 12275967 ECH