Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1899 ATGGGAGTGAAGGGTCTTTGGGAACTACTCGCTCCCGTTGGTCGCCGAGTCTCCGTCGAAACCCTTGCCGGCAAGAAGCTCGCCATTGATGCGAGCATATGGATGGTGCAGTTTATGAAGGCCATGCGGGACGAGAAGGGAGAAATGATTCGTAATGCCCATTTGATCGGCTTCTTTCGTCGAATTTGTAAGCTCTTGTTCCTGCGGACCAAGCCTGTTTTTGTCTTTGACGGCGGCACCCCGGCTCTCAAGAGACGAACTGTCATTGCTCGTCGGAGGCAGAGGGAAAACGCTCAGGCCAAAGTTCGAAAGACTGCTGAGAAATTGCTTCTCAACCATTTAAAGACATTGAAGTTGAAAGAATTGGCAAATGATATTAAGAACCAGAGGTTGAAGCAGAATAGTGATGCTAAGGGTAAGAAAAAATCAGATCAAGTGGACTCGGTTGGTGGTGATTTAGGAAGAAACAATCTGAAAGAGCTAGATAAAGTATCTAGAGCTAAATTTGCAGCTGAGGAGGACAAAAATTTATCCCAGAGTATGGTATCAACAAGTTACCATCAAGAGGAGCTTGATGCAATGGGCAAGGGTAAGGGGATTCTGTTGCATGAAATTGATTCTGTAGGATGTAGCTCAGTAAGTGATGATGTGATATCAAGGAAACATGACCAGGACAAAGTTGATGAAATGTTGGCTGCATCTATTGTGgcagaagaaaatgaaaagttaGTAAATGATGCATCAACGTCTGTTCGGGCTTTTATCTCTGAGGAAGACGATGACAtttatgatgaagatgaagagatGATCGTGCCAGAAATGCATGGTAAGGTTGATCCAGCTGTTCTTGCCTCTTTGCCTCCATCAATGCAACTTGACCTTCTTGTTCAGATGAGAGAGCGACTCATTGCAGAAAACAGACAGAAGTATCAGAAAGTGAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAGGCTTACCTTAAAACTGTTGCTTTCCGTCGGGAGATAGATCAAGTACAGAAAACTGCCGCAGGGGGTGGAGTAGGTGGTGTACAGACTTCACGTATTGCATCTGAAGCCAACAgagaatatatattttcaacatCTTTTACTGGTGATAAACAAGAACTTACCTCTACTAGattagagaaaaataaagataCACAAAAGAAGACGCCAGGAAACCATCCTTCACAGGGTTTTCTCAATAACACTGTGACCACCAATGATTCTAATACTTCAAGTGGATTGGTTAACAATGAACCTGGAGGCGCTTCTGATGAGGGTATCCAGACATATTTGGATGAGAGGGGCCATTTTCGAGTTAGTAGACTTAGAGCTATGGGAATGCGTATGACCCGTGATATACAAAGAAATTTGGATTTGATGAAGGAGATTGAGCAGGAAAGAACAGATGCAAACAAGGGTGCAAATGATAAAACAGTTCTTAATGAGGAGAAAAGTTCTGCATCAAAAAATTCTAGCAACCCACTTATTGGTATACACCAGAAGATTAATGTTGATTCAGCTGGACAGAATTCAAGGAATGAGCACTCTGTGTTAGCAGGGGATGCTCCTATAGAGATATCCTTCTTAGATGATGGCGAGAATAAGTGTCTTGATAGTGATGATGATTTATTTGCTAGTTTAGTAGAAGGTAATACAGGGGCAATTTCTTTTGCTGACAATTTCTCATTGAAAGAACAAGTTTCTAATTCTAATTCAGATTATTGTGATTGGGAAGAAGAGGTTATTGAAGGAAAGAGTAATGTTTTTTCTGTTGATGTTAAAGTAGAAAAAAAGCCATCTGCTGCAAATGATAATTATAGTGATGAGAGTGATGTAGAATGGGAGGAAGGCGATTGTGATGGTGCTAAAAGAACATCATTTTCTGCAGCTGAGCCAGGAAAAATAGCATCTCGAGGTCGCTTGGAAGAGGAGGCTGATTTGCAGGAGGCAATAAGAAGAAGTCTTGGGATCATAGGGGACCCAGAAACTAATAGCAGATCACCCATATATGAGCATTCAAATGATAAGGAGTTCAAATCAGATTTTGCATTAAACCAAAAAGATAATTTGGTTGATTCTGGAGTGAAGGACATTTATGACAATACTGGAGTACTGAATGGGGACAATAGAATGGTTGAGTCCACTTTGCAAAGGGAAGATGATAATGAACAAAGTGAATcatgttataaaattatagatGATAAGCTGGATAACACTGCTAGAAATAACCTTCAAACTTCCCAGGCTCCAGGGGAACATTCATCGTCATCTGTGGTATTTGATTCTGAGAAGATGGGAACATTTATCAAGAAGCCTTGTACAATGAATGTTGAATCTCATTCTGAAGATTTATTATCCAATGGAAATGAAATAACGAAGAATGAAGGCCATATGGCTGCAGATAAATTCATGGGTACCTTCAACGAAGATGTTAAGGGGTCTACAAATTGTAAAAAGTCCTTCACGATTGACTCTCTTGGTGCTTCAGAAGAGGAGAAAAAGTGTTACAGTAATGAAGCTGAACCGTCAAGTAATTCTTCTAAGATGTCCAAACCTGTTGCTCCTTTTGTGGAGTTATCCTTGGAAGGATTTACAGAAGACATGGACACTCAGCCAGAGTTGCCTAGAGAGGACAACCAGGGAAGCTTTGAGGAAAGGAAGAGTAACCTCGGCAAAGATGCAGAAAACTGCGGAAGTTTTGAGGAAATGAAGAGTAACCTTGACAGAGATGCAAGAACAGCCCAAGGTCATTTATCTGCAGATACAGTTGAGGttaatttggaagaagaaaTACGAATTCTTGGTCAAGAATATACAAACCTAGAACATGAACAGAGGAGGCTTGAACGTAATATGGAATCGGTCAACAGTGAATTATTTACTGAATGCCAGGAACTATTGCAAATGTTTGGCTTGCCATACATTATTGCCCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCAAAACTGGTAGATGGTGTTGTGACTGATGATTCTGATGTTCTTTTATTTGGGGCACGTAGTGTCTACAAGAATATATTTGATGACCGCAAATATGTAGAGACTTACTTCATGGAGGACATTGAGAAGGAGATTGGATTGACCAGAGAAAAATTAATACGCATGGCATTGCTTCTGGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTAAATGCTATTGAGGTTGTTAACGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCTACCATCTTTGGAAAATTTGATACAAAAAGTGGATCCAATACCAGAAAGAGAGGgtcaaaaattgaagaaaacatTCATGGCAGAGATTGCAACAAAAAGGAGACTATGGTAGACCAAAATATTTCCGGTACTCAGGAACAGAAGGAGTCAGACTACATCCAAGAAATGAGGCAGATTTTTATTGATAAACATAGAAATGTGAGCAAAAATTGGCatattccttcttcttttccaagTGAAACAGTTGTATCTGCTTACTCTTGCCCACAAGTGGACAATTCAACTGATTCATTCACATGGGGAAAGCCAGATCACCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTTGGGTGGACTAGCCAGAAAGCAGATGAATTGTTATTACCTGTTTTAAAGGAATATAACAAAAATGAGACTCAACTCCGGTTGGAAGCATTTTATACTTTCAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCTGTAAAAGGAATCACTGGTAATCAGCCTTCAGAGATGATGGACGGACCTGCTGAGGACTTGTCTAAGAGTAGAAAGAATGGGTCAGGTAGCCCTGTTGAACTTGGGGTTAATGGATCAGAATCAGATACTTTAAAGGGAAAGGGAACAGATGAAAGTCTTGCTAACATGAAGCCACTAAATTTAAAACAGtctaagaaaaggaagaagtcTGAAAATACTGTTGGTAAGACACAGTCAAGGAAAAAGGGAAACTTGAAGGATACTGCTTCAGGTCCTGGTCTATCTGAGGTAGATGTGCAGACAGGGGAAGAGCCAAGTGATGGTAAAGGGAGAGGTGTGGGAGCTCGAAGAGGAAAGGTAAAGGGAAGTCATGACTTTGATTCACATGAAACCACGTCTGGTGATCACTACAGTTATGACCATGAGCATAAAGCACATGGTATGAAGTCAAAAGGGCCGCAACAAGTACGAAGGAGCATAGTGCCCCTGAAACTAGTGAAGGCTTCACCTTTGAGAAATTCTGCTTACAATATTTTTgttAGCAATAAGACAGCCCTGAATGAAGAGAGGATAGATGAGAGGTTACCTGGTGTGCATGCTGCCTGTGTAGATGCTGCCACTGGTGTCAGCAGAAATAATGAAAGTATGATAAATCTTAACCCAAAGGATTTATCTAGAAGCCATCTTGAATCTGGAGGCGGGTTTTGTGCTGATGAAGATGAAACTAGTAATCCAGGAGACTACAATTATGATAGTTCTGTAAATGCTGACTACCTTAAAGTGGAAGGTGGGTTTTGTGTAGATGAGGATGAGAGAAATAGCGACAATAATGAAAATCATGACGACGCCACAGTTATAGTAGAGGATACTGCAGACCTTACACATCCTTCTGATAGGGGGACGGCAACACACAAGGTTGAGCTGAATAACGACCATGTGAATACTAGAGATAATGATGACCAGTCTCAGTCTGACATGGGAGTGTGGATACCAGAGAATGCTCATGGCAGTACTGAAAACTCCATGCCAGCATTTAATGCCATGCCTTTTCTAAGAAAGAAGAGGCGGAAGAGCTAA 4854 0.3988 MGVKGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEMIRNAHLIGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKTLKLKELANDIKNQRLKQNSDAKGKKKSDQVDSVGGDLGRNNLKELDKVSRAKFAAEEDKNLSQSMVSTSYHQEELDAMGKGKGILLHEIDSVGCSSVSDDVISRKHDQDKVDEMLAASIVAEENEKLVNDASTSVRAFISEEDDDIYDEDEEMIVPEMHGKVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDQVQKTAAGGGVGGVQTSRIASEANREYIFSTSFTGDKQELTSTRLEKNKDTQKKTPGNHPSQGFLNNTVTTNDSNTSSGLVNNEPGGASDEGIQTYLDERGHFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERTDANKGANDKTVLNEEKSSASKNSSNPLIGIHQKINVDSAGQNSRNEHSVLAGDAPIEISFLDDGENKCLDSDDDLFASLVEGNTGAISFADNFSLKEQVSNSNSDYCDWEEEVIEGKSNVFSVDVKVEKKPSAANDNYSDESDVEWEEGDCDGAKRTSFSAAEPGKIASRGRLEEEADLQEAIRRSLGIIGDPETNSRSPIYEHSNDKEFKSDFALNQKDNLVDSGVKDIYDNTGVLNGDNRMVESTLQREDDNEQSESCYKIIDDKLDNTARNNLQTSQAPGEHSSSSVVFDSEKMGTFIKKPCTMNVESHSEDLLSNGNEITKNEGHMAADKFMGTFNEDVKGSTNCKKSFTIDSLGASEEEKKCYSNEAEPSSNSSKMSKPVAPFVELSLEGFTEDMDTQPELPREDNQGSFEERKSNLGKDAENCGSFEEMKSNLDRDARTAQGHLSADTVEVNLEEEIRILGQEYTNLEHEQRRLERNMESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKEIGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGKFDTKSGSNTRKRGSKIEENIHGRDCNKKETMVDQNISGTQEQKESDYIQEMRQIFIDKHRNVSKNWHIPSSFPSETVVSAYSCPQVDNSTDSFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNQPSEMMDGPAEDLSKSRKNGSGSPVELGVNGSESDTLKGKGTDESLANMKPLNLKQSKKRKKSENTVGKTQSRKKGNLKDTASGPGLSEVDVQTGEEPSDGKGRGVGARRGKVKGSHDFDSHETTSGDHYSYDHEHKAHGMKSKGPQQVRRSIVPLKLVKASPLRNSAYNIFVSNKTALNEERIDERLPGVHAACVDAATGVSRNNESMINLNPKDLSRSHLESGGGFCADEDETSNPGDYNYDSSVNADYLKVEGGFCVDEDERNSDNNENHDDATVIVEDTADLTHPSDRGTATHKVELNNDHVNTRDNDDQSQSDMGVWIPENAHGSTENSMPAFNAMPFLRKKRRKS 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1899 1617 SUPERFAMILY PIN domain-like 2 1057 IPR029060 -
Sto8g1899 1617 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Sto8g1899 1617 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Sto8g1899 1617 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Sto8g1899 1617 MobiDBLite consensus disorder prediction 378 431 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 874 901 - -
Sto8g1899 1617 Pfam XPG I-region 976 1057 IPR006086 GO:0004518
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1361 1408 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 394 423 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1527 1617 - -
Sto8g1899 1617 Coils Coil 929 963 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1262 1414 - -
Sto8g1899 1617 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Sto8g1899 1617 MobiDBLite consensus disorder prediction 471 501 - -
Sto8g1899 1617 SMART xpgineu 973 1042 IPR006086 GO:0004518
Sto8g1899 1617 SMART HhH_4 1044 1077 IPR008918 GO:0003677|GO:0003824
Sto8g1899 1617 Gene3D - 1042 1156 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 130 154 - -
Sto8g1899 1617 Gene3D - 1 147 - -
Sto8g1899 1617 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Sto8g1899 1617 MobiDBLite consensus disorder prediction 379 393 - -
Sto8g1899 1617 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1616 - -
Sto8g1899 1617 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 1616 - -
Sto8g1899 1617 CDD H3TH_XPG 1045 1187 - -
Sto8g1899 1617 SMART xpgn3 1 98 IPR006085 GO:0004518
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1282 1296 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 471 488 - -
Sto8g1899 1617 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1042 1250 IPR036279 -
Sto8g1899 1617 Gene3D - 903 1041 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 130 148 - -
Sto8g1899 1617 ProSitePatterns XPG protein signature 2. 976 990 IPR019974 GO:0016788
Sto8g1899 1617 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Sto8g1899 1617 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1324 1342 - -
Sto8g1899 1617 CDD PIN_XPG_RAD2 959 1043 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1527 1578 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 870 901 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 1579 1603 - -
Sto8g1899 1617 MobiDBLite consensus disorder prediction 835 857 - -
Sto8g1899 1617 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1899 Sto-Chr8 12158961 12170871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1899 967 1074 Core DNA Replication Machinery Family AT5G26680 36.036 7.45e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1899 K10846 - gmx:100820295 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1899 8 12158961 12170871 Sto8g1899 8 12158961 12170871 ECH