Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1886 ATGGAGCTCACCGATTCCGGCAACCAGCTCAGAGACCCCGAGCACCCTCAAGATTCTCGCTCTGTACTCCAAATCGACCTCAATGAGATCCCCTCTCCTTCTTCCGCCGAAACCCTACCGGACTCCATCGACATCGTACGCACGTACCACGAGAACCCCGCGCCTCCCCCCGGCGGCCCCGCCGGCATCCCCTCCGATGTTTCGGGCTCCGCTTGTGGTGCCTGTGGTAGACCGGAGGTTCGGGGTCGTATGGTCGTCTGTGATGGCTGTGAGCGCGGCTTCCATTTGGGCTGCGCAGGAACGCGGGTCCGTCAAGATGTGAGCCCAGACGAATGGGTTTGTGGAAATTGTGTCTCTGGTGGGGTCAAGAGTACGCGCTGGCCATTGGGAGTCAAGTCAAAGCAGCTTTTGGATATGAATGCTTCGCCGCCCAGCGATTTTGACGGCGAGGGTAGTGAGGAATTGCAGGATTTGAGGTCAATATGGTTCCAATGCAATCGGAATGGAATATGCAAGCAAGATGTCATTGTCCCTGTGGTGGAAGTTGGTTCCAAACCAGCATAA 564 0.5674 MELTDSGNQLRDPEHPQDSRSVLQIDLNEIPSPSSAETLPDSIDIVRTYHENPAPPPGGPAGIPSDVSGSACGACGRPEVRGRMVVCDGCERGFHLGCAGTRVRQDVSPDEWVCGNCVSGGVKSTRWPLGVKSKQLLDMNASPPSDFDGEGSEELQDLRSIWFQCNRNGICKQDVIVPVVEVGSKPA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1886 187 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
Sto8g1886 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 141 IPR013083 -
Sto8g1886 187 Pfam PHD-finger 72 118 IPR019787 -
Sto8g1886 187 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
Sto8g1886 187 SUPERFAMILY FYVE/PHD zinc finger 68 127 IPR011011 -
Sto8g1886 187 PANTHER OS02G0192300 PROTEIN 19 152 - -
Sto8g1886 187 CDD PHD_SF 72 117 - -
Sto8g1886 187 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 19 152 - -
Sto8g1886 187 SMART PHD_3 71 118 IPR001965 -
Sto8g1886 187 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1886 Sto-Chr8 12065695 12066497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1886 1 159 C2H2 Transcription Factor Family AT3G01460 48.571 8.80e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto8g1886 PHD 3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1886 K22768 - zju:107415421 232.261