Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1885 ATGGAGTCCGGTCATCTTTTCTTCGGTCCCTCCGCTTGCAGCGGAAACATGCTGTTCCTCGGGAATGGCGATCCCGATTTTCGAGGAAGATCGATGATGTGCATGGAAGAAAGCTCAAAGAAGCGACCCTTTTTCAGCTCACCAGAGGAACTGTTCGATGATGAATATTACGATGAGCAGTTGCCGGAGAAGAAGCGCCGCCTCACTCCTGAGCAGgtGCATCTGCTGGAGAAAAGCTTTGAAGAAGAGAACAAACTGGAGCCGGAAAGGAAGACCCAGTTGGCAAAGAAGCTGGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGTTGGAAGACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTACGATTCCCTCCTTTCAAAGTATGACTCCATTCTCAAGGACAATGAAAAGCTTAAATCTGAGGTGGTAGCCTTAAACGAGAAACTTCAAGTTAAAGAGATGCCTGGAGCAGCAGCACCATTAGCAGATGAAAAAGCTGACCCACTTCTGATGGAAATAGCCCAAATGTCGGCACTTCCGTTCAACATGAAGGTGGAGGATCGTCTGAGTAGTGGGAGTGGTGGAAGTGCAGTGGTGGACCAAGGTAGTCCACAGCTTCTTGTGGATAGTGTTGATTCATACTTTCCTGCAGCTGACAACTATGAAGAATGCATGGTCGGAGTTAATAGGGTTCAGTCAGAGGAGGATGATGGCAGTGATGACGGCCGGAGTTACTTCTCCGATGTGTTTGTAGCCCCTGAACCTGCTCATGGAAACCATGAGGAGGGAGAGGCATTGGGTTGccaaaaaataaaattccaaGATCAACCACCTGGCTCCTTCCTTTTCCTGCTAGACTTCCGGCATGCTTTGGACTTTTCTGGGTCAAAAGTTGCCAGCGGTTTCTGCTCTAGTACAGAAGCAGTAAGTTGTTCAGAGCTGTTGGTTAAGCTTGAATTAGACAACATTTTCTCATATAAAATGGCTGAATCAAGGGAATATATGCGAAGGGCAAGAGAAGACAAAGTCGAGGATTTGAAAGCAGCTGAGAGTGATGACCAGTACCACCAGTCATTACTTATATGCTCACTCTTAATCATGTCCTCAAATGAAATTGTTGCCTGA 1158 0.4672 MESGHLFFGPSACSGNMLFLGNGDPDFRGRSMMCMEESSKKRPFFSSPEELFDDEYYDEQLPEKKRRLTPEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSKYDSILKDNEKLKSEVVALNEKLQVKEMPGAAAPLADEKADPLLMEIAQMSALPFNMKVEDRLSSGSGGSAVVDQGSPQLLVDSVDSYFPAADNYEECMVGVNRVQSEEDDGSDDGRSYFSDVFVAPEPAHGNHEEGEALGCQKIKFQDQPPGSFLFLLDFRHALDFSGSKVASGFCSSTEAVSCSELLVKLELDNIFSYKMAESREYMRRAREDKVEDLKAAESDDQYHQSLLICSLLIMSSNEIVA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1885 385 CDD homeodomain 64 120 IPR001356 GO:0003677
Sto8g1885 385 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 264 IPR045224 GO:0003700
Sto8g1885 385 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 264 - -
Sto8g1885 385 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Sto8g1885 385 Coils Coil 132 159 - -
Sto8g1885 385 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Sto8g1885 385 SMART HOX_1 62 123 IPR001356 GO:0003677
Sto8g1885 385 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Sto8g1885 385 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Sto8g1885 385 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Sto8g1885 385 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Sto8g1885 385 SUPERFAMILY Homeodomain-like 57 121 IPR009057 -
Sto8g1885 385 Gene3D - 58 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1885 Sto-Chr8 12048669 12052903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1885 1 278 Homeobox Transcription Factor Family AT3G01470 61.111 5.06e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto8g1885 Homeodomain 3.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1885 K09338 - gmx:100813420 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1885 8 12048669 12052903 Sto8g1885 8 12048669 12052903 ECH