Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1870 ATGGATAGCAGATTTGAGTACGCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAAATGGAGCACCTTGTGGAGCACATGAGGATCTCATATCATTCGGTTCACGAACCCACCTGTGGCATTTGCAGGAAACACTGCAGATCATTTGAGTCCCTAAGGGAACACCTTATAGGTCCATTGCCAAGACAGGAATGCAGAGAAATTTTTGCCAACCGAGGATGCAAGTTTTGCTTGAAGGTCCTTGATAGCTCATACGCTCGAAGGATCCACCAGGAAAGATGCCAACTCCCTGGAAATGCTGGACTAATTGGTCGCTTTGCAAACTTGGGTATTCGTGATAATTTGACTATTGGAAGAGGGCCACAAGTAGTTGCACTTGCTTGCAAGATGGTTGGGGGAGGCAGTGATGGCTCTCTAGATCTCTGTATTCGACCAGAATACTTAAGGGATGCAATGCCAATGAGGCAAGTGCAAAGGAAAATTCAAGATTTCCTCTGCAATGGAGAACCAATGTGGAAGATTAGACCAAGAAACGGGAGAGCCAGGATTCTTGTAGGTCATGGTTTAGATCATGACCTAGAGTGTTTACAAATGGAATATCGAGCAGAAATGATCAGGGACACTGCAAAGTACCCTCCATTGATGAAAACGAGCAAGCTGAGCAACTCACTCAAGTATGAGATTCAAAGTGGGATACAGGATCCTTATGAGGATTGTGTTGCAACAATGAGGCTGTACATGAGGATGAGATCCCAAGTGCACAAAAGAGAGGATCAGCCTTTGGCTTGTGACCCACAAAACAAGAACAACTTTGCTTCATGGAGGCAAAGTGAGCTTGAGAGAATGACACCGGAACAAATGCTGGAAATCTCAAGGTCTGACTACTACTGCTGGTGTTTGGATTAG 921 0.4495 MDSRFEYAETHRNKCAACFRQFNKMEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPRQECREIFANRGCKFCLKVLDSSYARRIHQERCQLPGNAGLIGRFANLGIRDNLTIGRGPQVVALACKMVGGGSDGSLDLCIRPEYLRDAMPMRQVQRKIQDFLCNGEPMWKIRPRNGRARILVGHGLDHDLECLQMEYRAEMIRDTAKYPPLMKTSKLSNSLKYEIQSGIQDPYEDCVATMRLYMRMRSQVHKREDQPLACDPQNKNNFASWRQSELERMTPEQMLEISRSDYYCWCLD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1870 306 SMART exoiiiendus 127 260 IPR013520 -
Sto8g1870 306 Gene3D - 146 274 IPR036397 GO:0003676
Sto8g1870 306 PANTHER OS02G0709000 PROTEIN 6 149 - -
Sto8g1870 306 PANTHER OS02G0709000 PROTEIN 148 306 - -
Sto8g1870 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Sto8g1870 306 SUPERFAMILY Ribonuclease H-like 148 256 IPR012337 -
Sto8g1870 306 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 148 306 - -
Sto8g1870 306 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 149 - -
Sto8g1870 306 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1870 Sto-Chr8 11944685 11946369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1870 3 306 C2H2 Transcription Factor Family AT3G27970 66.000 4.04e-167 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g1870 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1870 - - gmx:100813973 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1870 8 11944685 11946369 Sto8g1870 8 11944685 11946369 ECH