Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1838 ATGGCTGCAACTGCAACCGCCTCTTCAGTGGGTCCAAGATATGCACCACCTGATCCATCACTCCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACTGGGTATCTTTACTTTTGGAATCCCGAGACTAATGTGACCCAATATGAAAGGCCTTCAAGCTCAGCCCCCCCACCAAAGTCATCTTCTTCAGTGCCTAGTTCTTCTGTCCAGGTTCAACAATCATCTCAAGGGCTGCATCGTGGCCATAGTCCTGATTTAAATGATAGGTATGGTAGAGGCAGCATTGGTGGATCAAATTTTGAAGCTGGATCACGAAACCATCAGAATCAAAAAGGTGGGAGTTTTAGTTCTCAAAATGTTCCAAATGGGATGCACCCGACTGGAAATGTTAGCTCTTCCATTAAAGGTCATGGAGTTTCAGATGCAGAAGCTGGATTAACCCCTGAGTCCTATCGCCGTCGCCATGAAATTACTGTTACTGGAGATAACGTTCCTCCACCTTTTATGTCATTTGGCTCTACTGGCTTTCCATCTGAGATTCTTAGAGAGGTATCAGTTTCTGTTATCCTTTCTCTTTTGTTGTCTTTTCTCACTAGTGAAAGTGCGATATTTGCTCCTGGGGAGGAGCCAATGTCGTACGCTGTGGTGCCCTCATTTGTGGGGCTAGCATTTAGTTTGGAGCGCCCTTGTTTGGTGGACCATTTTTTTGGAAGGGCTTTCCTAATCATCCAAGTACACAATGCTGGGTTCTCTTCCCCGACACCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCTAAAACAGGTTCTGGAAAAACCTTGGGATATTTAATCCCCGGATTTATCCACCTTAAACGTGTTGGTAATGACTCCAAAATGGGCCCCACTGTATTGGTACTTTCACCAACAAGGGAGCTGGCAACACAGATACAGGATGAAGCTGTGAAGTTTGCAAAATCATCTAGAATTTCTTGTGTATGTTTGTATGGAGGAGCTCCAAAGGGTCCCCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCGGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCACCAGGTCTCTTACCTTGTGCTAGATGAAGCTGACCGGATGCTGGATATGGGTTTTGAACCTCAGATTAGGAAGATTGTGAAAGAAGTGCCTGCACGGCGACAAACCCTCATGTTCACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCTGCTGATCTACTGGTCAATCCCGTTCAGGTCAACATTGGCAATGTTGATGAGCTTGTTGCTAATAAGTCCATTACTCAGCATATAGAAGTAATTGCACCAATGGAGAAACACAGACGGTTGGAGCAGATATTGCGGTCACAGGATCCAGgatcaaaaataattattttttgttctacTAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGGGCCGCTGCCATTCATGGTGATAAGTCCCAGTCTGAGAGGGACCATGTGTTGAATCAGTTTCGAACTGGGAAGTCTCCTGTGCTTGTAGCAACAGATGTTGCGGCTCGCGGATTGGACATCAAAGATATTAGGGTCGTTGTCAATTATGACTTCCCAACTGGAGTGGAGGATTATGTACATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACAGGGTTGGCTTACACATTTTTTGGAGACCAGGATGCTAAACATGGTTCGGATCTCATCAAAATCTTGGAAGGTGCAAACCAGCGAGTCCCTCCAGAACTTCGTGATTTGGCATCACGTGGGGGTGGTGGAATGAACAGATCCAGACGATGGGGTTCTGGTGGTCGTGGGGGATTTAATGATTCTGGATATGGAGGTAGGAATAACGATTCTGGGTATGGTGGAAGGGGTAATGATTCAGGTTATGGGGGAAGGGGTGGTTGGTCAGCCACTGCTGGTGGCCGAGGTGGAGGTGGAGGGCGCGGATTTGACTATGATTCACAGAGGAATGATCGTGGATATGGACATGACACAGAAGCCCGTGGGAGGTTTGATAAAGGAAGAAGTCGTAGCCCTGATAGATCAAGTTGTGGTGACAGGGCTGCCCCATATCAACAATCCCAAGGCTACAGCTTTCACAACACAATGATGGACCGAAGAGGGGCCAGTGATCACAACAACAAAAGCTTTGATCGGGATCGAAGCCGTAGTCGTAGCCCTGTTATGCATGAAAGGGCTGCACCTGTTCATGAACGTTCCCCTGTTCGAAGTTTTCATCAATCGATGATGGAGCGTGGTCGATCATCCCCTTCTCGGCTACCTCCTTTTGGCAGTGATAGTTGTACAGAAGATAGAGGTTCAAAATACACACAAGATACTTATTTGGACAGAAGTTCGGGTCAGAAGTGGGGAGGATCTCCTGGAAGATATGGTGGGTCCCATTCTTCCTACCAtggagaagaggaggaagggatGATTCCTGATGAAGACACGAGACCTCAAGATGATGGGGTTGCGGCGTAG 2553 0.4626 MAATATASSVGPRYAPPDPSLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAPPPKSSSSVPSSSVQVQQSSQGLHRGHSPDLNDRYGRGSIGGSNFEAGSRNHQNQKGGSFSSQNVPNGMHPTGNVSSSIKGHGVSDAEAGLTPESYRRRHEITVTGDNVPPPFMSFGSTGFPSEILREVSVSVILSLLLSFLTSESAIFAPGEEPMSYAVVPSFVGLAFSLERPCLVDHFFGRAFLIIQVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSKMGPTVLVLSPTRELATQIQDEAVKFAKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVIAPMEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGKSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHGSDLIKILEGANQRVPPELRDLASRGGGGMNRSRRWGSGGRGGFNDSGYGGRNNDSGYGGRGNDSGYGGRGGWSATAGGRGGGGGRGFDYDSQRNDRGYGHDTEARGRFDKGRSRSPDRSSCGDRAAPYQQSQGYSFHNTMMDRRGASDHNNKSFDRDRSRSRSPVMHERAAPVHERSPVRSFHQSMMERGRSSPSRLPPFGSDSCTEDRGSKYTQDTYLDRSSGQKWGGSPGRYGGSHSSYHGEEEEGMIPDEDTRPQDDGVAA 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1838 850 Pfam Helicase conserved C-terminal domain 461 569 IPR001650 -
Sto8g1838 850 MobiDBLite consensus disorder prediction 675 705 - -
Sto8g1838 850 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 128 700 - -
Sto8g1838 850 Gene3D - 146 439 IPR027417 -
Sto8g1838 850 MobiDBLite consensus disorder prediction 710 724 - -
Sto8g1838 850 SMART ww_5 20 53 IPR001202 GO:0005515
Sto8g1838 850 MobiDBLite consensus disorder prediction 47 81 - -
Sto8g1838 850 CDD SF2_C_DEAD 449 578 - -
Sto8g1838 850 CDD WW 22 50 IPR001202 GO:0005515
Sto8g1838 850 MobiDBLite consensus disorder prediction 1 27 - -
Sto8g1838 850 MobiDBLite consensus disorder prediction 99 136 - -
Sto8g1838 850 Pfam DEAD/DEAH box helicase 254 424 IPR011545 GO:0003676|GO:0005524
Sto8g1838 850 MobiDBLite consensus disorder prediction 728 762 - -
Sto8g1838 850 Gene3D - 17 64 - -
Sto8g1838 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 583 IPR027417 -
Sto8g1838 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 608 IPR001650 -
Sto8g1838 850 Gene3D - 440 610 IPR027417 -
Sto8g1838 850 SMART helicmild6 489 569 IPR001650 -
Sto8g1838 850 MobiDBLite consensus disorder prediction 47 147 - -
Sto8g1838 850 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Sto8g1838 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 435 IPR014001 -
Sto8g1838 850 MobiDBLite consensus disorder prediction 662 850 - -
Sto8g1838 850 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 128 700 - -
Sto8g1838 850 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Sto8g1838 850 MobiDBLite consensus disorder prediction 604 648 - -
Sto8g1838 850 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Sto8g1838 850 SMART ultradead3 249 452 IPR014001 -
Sto8g1838 850 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1838 Sto-Chr8 11739664 11744190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1838 245 607 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 5.15e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1838 K12823 - qsu:111996561 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1838 8 11739664 11744190 Sto8g1838 8 11739664 11744190 ECH