Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1837 ATGGATTTCAATTCGAAATTCCAGGAGAGCTTCCCTTCAGTACTTTCTGGGCATTTCCCAGAAAACAACAACAACCCCCACCACCATGAATTCTCACTCCCCCTCCCTCTGATCCCTTACCAGAACAACAACAACCTTAACCCAACAACGTTGTTCCACCAACCTGGCAGCGGAAGCAGCACCCAATTCCATCACCACCACCCAAATAATCCCCACAtgaacctcaacctcaacccCCCACTCTTTCTCGACGACAATTCCCCATCACTGGCTCTTCCTTTCGACCCCAATCACGAGCCCATCTCAGATTTCATCACCAACCTCCACCATCACCATCACTATCCCCCACAAAACAAAGCCATGGATGCCTTGCATGGCTACCACCACAATCTCCTCCTTCCCTCTGGGCCCTCCACGGCCCACATGGGCCTTCCCTTCCCATCATTTTACCATCACCCTTATGGCCCTTCTCCGTTGAAGCTTAGGCTCCCAATCCCAGATGAACCAATTTCGTCCTTCCTTGGCAccattaataataacaataacaggTATGGATATGGATATGGATGGGATCAGCAGGATGAGGGAGACGATGCTGAGAGAACAAATACGCTAGTGCAGATGCGAAAGACGACTGTTCCTACCAACGTCAATATCATCAAAGGCCAATGGACACCGGAGGAGGATAGGATGCTAGTGCAGCTGGTGGACCGATATGGAATCAAGAAGTGGTCTCATGTTGCTAAGACTCTCACTGGGAGAGTGGGAAAGCAGTGTAGGGAGAGATGGCACAACCACCTGCGTCCGGACATTAGGAAGGATGCATGGACTGAGGAAGAAGACAAGGTCCTGATCGAAGCTCACAAGATCGTGGGCAACAAGTGGGCCGAGATCGCTCGCCGGCTCCCCGGACGCACCGAGAACACCATCAAGAACCACTGGAACGCCACCAAGCGCCGCCAGTTCGCCAAGAAGCAGAGGACCAGGCCCTCCTCCTCCCGCCCTTCCCTCCTCCAGGAATACATCAAGCAAGTCACCGAGCTCAACGCCCCGCCACCCCAGCCACAAGACGACGAAGAAGAGGCCTATTATGATGACGTCATGAACGAGGACGACGACAACATCATTATTAATGATAACGTCAAAGTTCGTTACGAGAGCGCCAGCGAGGACGACGAGGAGGAGGATGTCGACACTAGTTCTGGGGACTGGGACGTCGAGGTGGAGGAAGAGGACTTGGAAGCGAAGGCGAAGGCGAAGGCGGCGAGGGCGAAGGCTAAGGCAAAAGGGAAGGCTAAGATGggtactaataataataatactattgcttataataacaacaataatggTGAAGAGGAGGTGGCTATGGAGATGAGTACCCTTGGGCTGGTGAGCGAGGATAACATGAAGAAGGAGATGGATCTCATGGAGATGATATGTGGTGGTGAAATGCGGATTTGGCGAGATTGGGCAAGGATGCAGATATTCGTAAAAACCCTAACGGgtaaaaccataaccctagagGTCGAATCCTCTGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGGATCCCGCCGGATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCCGATTACAACATCCAGAAGGAATCGACTCTCCACCTGGTCCTGCGCCTTCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACGAAGCCGAAGAAGATcaagcacaagaagaagaaggtgaagctCTCGGTTCTCCAATTCTACAAGGTGGATGATTCTGGAAAGGTTCAGAGGTTGAGGAAGGAGTGCCCGAATGCGGAATGCGGTGCTGGAACCTTCATGGCCAACCATTTCGATCGTCACTACTGTGGCAAATGCGGATTGACATATGTTTACCAGAAGGCTGGTGGTGATTAG 1947 0.4951 MDFNSKFQESFPSVLSGHFPENNNNPHHHEFSLPLPLIPYQNNNNLNPTTLFHQPGSGSSTQFHHHHPNNPHMNLNLNPPLFLDDNSPSLALPFDPNHEPISDFITNLHHHHHYPPQNKAMDALHGYHHNLLLPSGPSTAHMGLPFPSFYHHPYGPSPLKLRLPIPDEPISSFLGTINNNNNRYGYGYGWDQQDEGDDAERTNTLVQMRKTTVPTNVNIIKGQWTPEEDRMLVQLVDRYGIKKWSHVAKTLTGRVGKQCRERWHNHLRPDIRKDAWTEEEDKVLIEAHKIVGNKWAEIARRLPGRTENTIKNHWNATKRRQFAKKQRTRPSSSRPSLLQEYIKQVTELNAPPPQPQDDEEEAYYDDVMNEDDDNIIINDNVKVRYESASEDDEEEDVDTSSGDWDVEVEEEDLEAKAKAKAARAKAKAKGKAKMGTNNNNTIAYNNNNNGEEEVAMEMSTLGLVSEDNMKKEMDLMEMICGGEMRIWRDWARMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1837 648 Pfam Ubiquitin family 495 566 IPR000626 GO:0005515
Sto8g1837 648 SUPERFAMILY Ubiquitin-like 492 569 IPR029071 -
Sto8g1837 648 CDD SANT 275 318 IPR001005 -
Sto8g1837 648 Pfam Ribosomal protein S27a 594 639 IPR002906 GO:0003735|GO:0005840|GO:0006412
Sto8g1837 648 SMART ubq_7 493 564 IPR000626 GO:0005515
Sto8g1837 648 CDD SANT 224 267 IPR001005 -
Sto8g1837 648 Gene3D - 573 646 IPR038582 -
Sto8g1837 648 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 271 IPR017930 -
Sto8g1837 648 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 490 638 - -
Sto8g1837 648 PANTHER UBIQUITIN 490 638 - -
Sto8g1837 648 Gene3D - 493 572 - -
Sto8g1837 648 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 322 IPR017930 -
Sto8g1837 648 Gene3D - 274 341 - -
Sto8g1837 648 Gene3D - 220 272 - -
Sto8g1837 648 PRINTS Ubiquitin signature 503 523 IPR019956 -
Sto8g1837 648 PRINTS Ubiquitin signature 524 544 IPR019956 -
Sto8g1837 648 PRINTS Ubiquitin signature 545 566 IPR019956 -
Sto8g1837 648 SMART Ribosomal_S27_2 594 639 IPR002906 GO:0003735|GO:0005840|GO:0006412
Sto8g1837 648 CDD Ubl_ubiquitin 493 568 - -
Sto8g1837 648 MobiDBLite consensus disorder prediction 317 337 - -
Sto8g1837 648 ProSiteProfiles Myb-like domain profile. 268 318 IPR001005 -
Sto8g1837 648 ProSitePatterns Ubiquitin domain signature. 519 544 IPR019954 -
Sto8g1837 648 SUPERFAMILY Zn-binding ribosomal proteins 592 645 IPR011332 GO:0006412
Sto8g1837 648 SUPERFAMILY Homeodomain-like 218 314 IPR009057 -
Sto8g1837 648 SMART sant 220 269 IPR001005 -
Sto8g1837 648 SMART sant 272 320 IPR001005 -
Sto8g1837 648 ProSiteProfiles Ubiquitin domain profile. 493 568 IPR000626 GO:0005515
Sto8g1837 648 ProSiteProfiles Myb-like domain profile. 216 267 IPR001005 -
Sto8g1837 648 Pfam Myb-like DNA-binding domain 224 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1837 Sto-Chr8 11729477 11735663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1837 493 646 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 95.455 4.40e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g1837 ubiquitin 7.8e-33 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1837 K02977 - cit:102610115 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1837 8 11729477 11735663 Sto8g1837 8 11729477 11735663 ECH