Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1804 ATGGACTCGCCCATTAACGACCCTGTTCGTGACGGAGAAACCAACGATGTTAGGTCCTTTCCccacagagaagaagaagacgaggaCAAGTCTCAGCCTCTTACCGGCGATGGAGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCCCAATTTGTCAAGCACTTTGGTAAATATGGTGAGATTACGGACAGTGTAATAATGAAGGACCGGAAGACTGGGCAACCTCGTGGATTTGGTTTTATAACTTATGCGGATCCCTCTGTGGTTGATAAGGTTATTGAGGATACTCACGTTATCAACGGCAAACAAGTCGAAATTAAGCGTACAATACCAAGGGGAGCTGTTGGCTCAAAGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCGACAGTGACTGAAGTTGCTATTTATGCAGATGAGTTCAGAGATTTCTTTTCACACTACGGAGAGGTCAAAGATCACCAAATAATGCGGGACCATTCAACAAACCGTTCTCGTGGCTTTGGGTTTATCACCTTTGAGTCTGAGGAAGCTGTTGAAGATCTCCTATCTAAGGGGAACAAGATTGAGTTTGCTGGGGCTCAGGTTGAAATCAAGAAAGCTGAGCCAAAAAAGCCAAACCCCCCACCACCACCTTCCAAGCGCTATAATAATGACTCTAGATCTTCATTTGGTAGTGGGTATGGTGATGCTTATGATGGATTTGGTGGAGGCTTTGGTGTTGGGGGATATAGGTCCGGCAGTGTCTATGGTGGTAGGGGTGGAGCTTACGGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCCGGTGCCATGGGGGCCTATAGAGGAGACCCCTCCCTTGGGTACTCTGGTCGTTATGGAGGTGGGTTCAGCAGGGGTTATGATCTTGGAGGATATGGTGGACCTAGTGAGAATTATGGGGGATACGGTGGTGTTGGTTCATCTGGTGGTGCCTATGGAAGCGGGTATGATGCCAGCCTAGGGGGTGGATATGCTGGTGGTAGCGGTGGCAGTGGTGGTTCCTTCTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGACTGGTCGATATCATCCATATGGAAGATAG 1128 0.4699 MDSPINDPVRDGETNDVRSFPHREEEDEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEVAIYADEFRDFFSHYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVEDLLSKGNKIEFAGAQVEIKKAEPKKPNPPPPPSKRYNNDSRSSFGSGYGDAYDGFGGGFGVGGYRSGSVYGGRGGAYGGYGSEFGGYGGYAGAMGAYRGDPSLGYSGRYGGGFSRGYDLGGYGGPSENYGGYGGVGSSGGAYGSGYDASLGGGYAGGSGGSGGSFYGSRGGYGGAGTGRYHPYGR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1804 375 SMART rrm1_1 131 209 IPR000504 GO:0003723
Sto8g1804 375 SMART rrm1_1 43 114 IPR000504 GO:0003723
Sto8g1804 375 MobiDBLite consensus disorder prediction 208 231 - -
Sto8g1804 375 SUPERFAMILY RNA-binding domain, RBD 42 144 IPR035979 GO:0003676
Sto8g1804 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Sto8g1804 375 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 375 - -
Sto8g1804 375 MobiDBLite consensus disorder prediction 1 43 - -
Sto8g1804 375 MobiDBLite consensus disorder prediction 1 33 - -
Sto8g1804 375 Gene3D - 42 121 IPR012677 -
Sto8g1804 375 SUPERFAMILY RNA-binding domain, RBD 120 225 IPR035979 GO:0003676
Sto8g1804 375 Gene3D - 124 241 IPR012677 -
Sto8g1804 375 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 375 - -
Sto8g1804 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Sto8g1804 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 205 IPR000504 GO:0003723
Sto8g1804 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 213 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1804 Sto-Chr8 11466360 11470524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1804 44 206 Eukaryotic Initiation Factors Gene Family AT1G71770 19.643 4.37e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1804 K12741 - gmx:100813165 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1804 8 11466360 11470524 Sto8g1804 8 11466360 11470524 ECH