Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1787 ATGGCTTCCATCGTCGGATcaccctcttcatcttctccttgTCACCTCCTTCTCAAACCTCCTTCACCTTCTCCGTCACTCCCTACCTCTACGCATCTCTTTCTCCCCAATCCCGCCCCATGTCCCAAAACCCTATCTTGCAAACTCTGCTCCTCATTCGTCGCCGGCGAATCTCCCGCCTTCCGTTACTCCCTTTCCTCTTCTCCAGTATTCGTCGATTCCTCCTCCCGCCATCGGTCCCTGATTGTGCGAGCAGCCAGAGGAAAGTTCGAGAGAAAGAAGCCTCACGTTAACATAGGCACGATCGGTCATGTTGACCATGGAAAGACTACTCTTACGGCTGCTCTTACCATGGCTCTGGCCTCTGTGGGAAATAGCGCGCCGAAGAAGTACGACGAAATTGACGCAGCACCGGAGGAAAGAGCGCGAGGGATTACGATCAATACGGCTACAGTGGAATACGAAACTGAGAGTAGACACTATGCGCATGTAGATTGCCCTGGGCATGCTGATTATGTGAAGAATATGATCACCGGTGCGGCACAAATGGACGGTGCGATTCTGGTTGTTTCTGGTGCTGATGGGCCAATGCCTCAGACGAAAGAGCACATTCTGTTGGCGAAACAAGTGGGTGTGCCTAATTTGGTAGTCTTTATGAACAAGCAGGACCAAGTTGATGATGAGGAGCTTCTTCAATTGGTGGAGATGGAAGTCCAAGAGCTTTTGACCATGTATGAATTCCCAGGTGATGAAGTTCCTATAGTTTCTGGTTCAGCTTTGTTGGCTTTAGAGGCATTGATGGCCAACCCCAAAGTTAAGAGAGGGGAGAATGTTTGGGTGGATAAGATTTATGAATTGATGGATGCTGTTGATAGTTACATACCAATTCCACAGAGACAAACTGATTTGCCTTTCCTCATGGCAATTGAAGATGTTTTCTCAATTACTGGTCGTGGTACTGTGGCTACAGGTCGTGTTGAAAGGGGCAAAGTTAAGATTGGGGATTCTGTGGATATAGTAGGTCTTAAGGAAACCAGGACTACAACAGTTACTGGGGTTGAAATGTTTCAGAAAATACTTGATGAAGCGCTTGCAGGTGATAATGTGGGGCTTTTGCTTAGGGGAATTCAGAAAACAGATATTCAAAGAGGAATGGTTATTGCTAAACCCGGCACTATTACACCACATTCTAAGTTCACTGCTATTGTATATGTGTTGAGAAAGGAGGAGGGAGGGAGGCATTCACCTTTCTTTGCTGGATACAGACCTCAATTCTACATGAGAACCACTGATGTCACTGGGAAGGTTTCCAAGGTCATGAATGATAGAGATGAAGAGACTAAGATGGTTATGCCTGGTGATCGTGTGAAGATGGTTGTTGAACTAATATTTCCAGTGGCTTGTGAACAAGGAATGAGATTTGCAATTAGAGAAGGTGGGAAGACTGTTGGGGCTGGCGTCATCCAGTCTATCATTCAATAA 1482 0.4575 MASIVGSPSSSSPCHLLLKPPSPSPSLPTSTHLFLPNPAPCPKTLSCKLCSSFVAGESPAFRYSLSSSPVFVDSSSRHRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASVGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNLVVFMNKQDQVDDEELLQLVEMEVQELLTMYEFPGDEVPIVSGSALLALEALMANPKVKRGENVWVDKIYELMDAVDSYIPIPQRQTDLPFLMAIEDVFSITGRGTVATGRVERGKVKIGDSVDIVGLKETRTTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVIAKPGTITPHSKFTAIVYVLRKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSKVMNDRDEETKMVMPGDRVKMVVELIFPVACEQGMRFAIREGGKTVGAGVIQSIIQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1787 493 MobiDBLite consensus disorder prediction 1 30 - -
Sto8g1787 493 Gene3D Translation factors 300 428 - -
Sto8g1787 493 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 94 298 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 CDD EFTU_III 394 488 - -
Sto8g1787 493 Gene3D - 86 297 IPR027417 -
Sto8g1787 493 PANTHER ELONGATION FACTOR TU-RELATED 47 492 - -
Sto8g1787 493 PANTHER ELONGATION FACTOR TU 47 492 - -
Sto8g1787 493 TIGRFAM small_GTP: small GTP-binding protein domain 97 230 IPR005225 GO:0005525
Sto8g1787 493 Pfam Elongation factor Tu C-terminal domain 392 491 IPR004160 -
Sto8g1787 493 SUPERFAMILY Translation proteins 299 395 IPR009000 -
Sto8g1787 493 Pfam Elongation factor Tu GTP binding domain 94 295 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 320 IPR027417 -
Sto8g1787 493 TIGRFAM EF-Tu: translation elongation factor Tu 86 493 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto8g1787 493 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 135 150 IPR031157 -
Sto8g1787 493 Pfam Elongation factor Tu domain 2 319 387 IPR004161 GO:0005525
Sto8g1787 493 CDD EF_Tu 95 297 IPR041709 -
Sto8g1787 493 Hamap Elongation factor Tu [tuf]. 85 493 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto8g1787 493 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 392 492 IPR009001 -
Sto8g1787 493 Gene3D Translation factors 432 492 - -
Sto8g1787 493 MobiDBLite consensus disorder prediction 1 17 - -
Sto8g1787 493 PRINTS GTP-binding elongation factor signature 98 111 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 PRINTS GTP-binding elongation factor signature 142 150 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 PRINTS GTP-binding elongation factor signature 215 224 IPR000795 GO:0003924|GO:0005525
Sto8g1787 493 CDD EFTU_II 305 391 IPR033720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1787 Sto-Chr8 11363401 11364882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1787 92 491 Eukaryotic Initiation Factors Gene Family AT5G60390 30.425 5.95e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1787 K02358 - vvi:100245586 754.592