Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1767 ATGCGGCCTTATCTTTCCCTCTCTTTCCTCCTTATCGTTCTCTCTCTTTACACACTACTTGCTTCTTCCTCACCCCTTCATCAAGACCCCAATCTTGTTGTACAAGACGTgcacaggtatatatatatatatatatatatatatatatatatattaatGCGCATCAATGCGTCGAGGAGAAACCTGGGGTCCGTATCATGCGGAACCGGGAACCCCATCGACGACTGCTGGCGATGCGACCCCAACTGGGAGTCGAACCGGCAGAGGCTAGCGGACTGCGCTATCGGCTTCGGCAAGGACGCCATGGGGGGACGAAACGGGCGCATCTACGTGGTTTCGGATTCGGGCGACGACGACCCCATCAACCCGAAACCCGGCACTCTCCGTCACGCGGTCATACAAGAGGAGCCGCTCTGGATCATCTTCAGCCGAGACATGGTGCTGAACCTGAAGCAAGAGCTAATAATGAACTCCTACAAAACCATCGACGGGCGAGGCGCCAACGTGCACATCGCGGGGGGAGGATGCCTGACCCTCCACTTCATCTCCAACGTCATCATCCACGGCATCAACATCCACGACTGCAAGCCCACGGGGAACGCGGAGATCCGCGACTCACCCAATCACTCGGGGTTCTGGACGGTGTCGGACGGCGACGGCATCTCCATCTTCAACTCGAAACACGTGTGGGTGGACCACTGCTCCCTCTCGAACTGCCAGGACGGGCTCATCGACGCCATCCACGGATCCACCGCCATCACCATCTCCAACAACTACATGACGCATCACGACAAGGTGATGCTGCTGGGGCATAACGACGAGTACGAGGCGGATAAGGACATGCAGGTGACGGTGTCGTTTAACCACTTCGGGGAAGGGCTGGTGCAGAGGATGCCCAGGTGTAGACACGGGTTTTTCCACGTGGTGAACAATGAGTACACGCATTGGGAGATGTACGCTATAGGGGGGAGTGGGGAGCCTACGATTCTTAGCCAGGGGAATAGGTTCCTTGCGCCGGATGAGAAGGCCAGCAAGGAGGTCACCAAGCACGAGGATGCGGCGGAGAGTGAGTGGATGAGGTGGAATTGGAAGTCGGAGGGGGATATGTTCTTGAATGGAGCCTTCTTCACGCAGTCCGGGGCCACTTCTGCTTCTACCTACGCTAAAGCCTACAGCCTTAGCGCTAGACCCTCCTCTCTCGTTCCTTCTATTACCCTTACTGCTGCCTCGAGGGCCTCGCTGGCAGGGGCAGGAGGGGAGGAGATGTCTTCTCCCTGGGAGAGGGGAGAGCTGGCAGGGGAGCCGCTGGGAGAAGCAGAGGCTTCAGGGGATGATGCTGATGACTCGGGGCTCTTGGCGGAAGGTGCGGGAGCCTCGACGGACTCCGAGCTCTTCGGGGAAGATGCGGGGGATGAGGATTCCGATGAGGATGACTTGGGGGATGAAGCCGGAGAGGCACCGGGGGAGGAGGCAGGGGATGCTGATGGAGAGTCTGCACCCATTGCTCCGGCCACCGCCACGAAGAGCACAGCAAGAACGATGATGAATTGA 1551 0.568 MRPYLSLSFLLIVLSLYTLLASSSPLHQDPNLVVQDVHRYIYIYIYIYIYILMRINASRRNLGSVSCGTGNPIDDCWRCDPNWESNRQRLADCAIGFGKDAMGGRNGRIYVVSDSGDDDPINPKPGTLRHAVIQEEPLWIIFSRDMVLNLKQELIMNSYKTIDGRGANVHIAGGGCLTLHFISNVIIHGINIHDCKPTGNAEIRDSPNHSGFWTVSDGDGISIFNSKHVWVDHCSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHNDEYEADKDMQVTVSFNHFGEGLVQRMPRCRHGFFHVVNNEYTHWEMYAIGGSGEPTILSQGNRFLAPDEKASKEVTKHEDAAESEWMRWNWKSEGDMFLNGAFFTQSGATSASTYAKAYSLSARPSSLVPSITLTAASRASLAGAGGEEMSSPWERGELAGEPLGEAEASGDDADDSGLLAEGAGASTDSELFGEDAGDEDSDEDDLGDEAGEAPGEEAGDADGESAPIAPATATKSTARTMMN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1767 516 MobiDBLite consensus disorder prediction 436 516 - -
Sto8g1767 516 PANTHER OS04G0137100 PROTEIN 53 409 - -
Sto8g1767 516 Gene3D - 70 411 IPR012334 -
Sto8g1767 516 Pfam Pectate lyase 152 336 IPR002022 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Sto8g1767 516 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Sto8g1767 516 SUPERFAMILY Pectin lyase-like 56 406 IPR011050 -
Sto8g1767 516 MobiDBLite consensus disorder prediction 465 492 - -
Sto8g1767 516 PANTHER PECTATE LYASE 18-RELATED 53 409 IPR045032 GO:0030570
Sto8g1767 516 SMART amb_all 145 342 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1767 Sto-Chr8 11257545 11262160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1767 4 417 Polysaccharide Lyase AT5G63180 67.308 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1767 K01728 - zju:107415231 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1767 8 11257545 11262160 Sto8g1767 8 11257545 11262160 ECH
Sto8g1767 8 11257545 11262160 Sto13g0354 13 3118149 3121319 ECH