Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1711 TTGGAAATACTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTAGAACCTCGCCTGATTGAGCATGTTAGCAATGAGATTATGGACAGAGATCCCAATGTCCGGTGGGATGACATTGCGGGATTGGAGCATGCCAAGAAATGTGTCACTGAAATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAGGGATGCCGCTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCACTACCGGTATTACAGATTGGTGAAGGTGAAAAACTAGTAAGAGCTCTGTTTGGAGTTGCCAGTTGTCGCCAACCAGCAGTAATATTTGTTGATGAAATAGATTCACTCCTATCTCAGCGTAAATCAGAGGGCGAACATGAATCAAGTAGAAGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTCGACAGTGGTACTGAGCAAATTCTTCTCATAGGGGCAACAAACCGCCCCCAAGAGCTTGATGAAGCAGCACGAAGGCGACTTACTAAAAGACTTTATATCCCCCTGCCATCGTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTTTGGAGAAGGACGGATTATTCAAGCTCTCGAGGGAGGAACTTGATGCCATATGCAACTTAACAGAAGGATATTCGGGATCCGACATGAAAAACTTGGTGAAGGATGCTTCTATGGGTCCCCTTAGAGAGGCTTTAAGACAAGGCATAGAGATCACCAAGTTGAAAAAGGAAGATATGCGGCCAGTAACGCTTGAGGACTTTAAGAATTCCCTTCAAGAGGTGAGGCCTTCTGTTTCCCCGAATGAACTTGGCACTTACGATGAATGGAACAAGCAATTTGGAAGCCTATCCCTATAG 876 0.4532 LEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPLPVLQIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDSGTEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDGLFKLSREELDAICNLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTLEDFKNSLQEVRPSVSPNELGTYDEWNKQFGSLSL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1711 291 Pfam Vps4 C terminal oligomerisation domain 253 287 IPR015415 -
Sto8g1711 291 CDD AAA 69 180 - -
Sto8g1711 291 PANTHER FIDGETIN-LIKE PROTEIN 1 3 82 - -
Sto8g1711 291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 286 IPR027417 -
Sto8g1711 291 Gene3D - 11 82 IPR027417 -
Sto8g1711 291 Gene3D - 88 283 IPR027417 -
Sto8g1711 291 PANTHER FIDGETIN-LIKE PROTEIN 1 88 288 - -
Sto8g1711 291 PANTHER AAA DOMAIN-CONTAINING 3 82 - -
Sto8g1711 291 PANTHER AAA DOMAIN-CONTAINING 88 288 - -
Sto8g1711 291 ProSitePatterns AAA-protein family signature. 152 171 IPR003960 GO:0005524|GO:0016887
Sto8g1711 291 Gene3D - 181 267 - -
Sto8g1711 291 Pfam ATPase family associated with various cellular activities (AAA) 87 180 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1711 Sto-Chr8 10931240 10933987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1711 13 289 Calmodulin-binding Proteins AT3G56690 29.221 2.11e-29 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1711 8 10931240 10933987 Sto8g1711 8 10931240 10933987 ECH