Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1687 ATGGATTGGGACTGGAAAGAGTTTGCGTGGGATCCGTACGGCTCGGAGCTATCAAACGACGCAGCTTCGGTGGATTTGAGGCTCGGAGACACTTCCGATTCGGTGGAAAAATCATCGGCTCATAAACCCCAGTCGAGAGAGTCGAAATCGGAAGTTTCAGCTTGTGGGTCGTCAAAGAGGAGCCGTACGCAGCAGAATGTGTCGTGCTCGGTGGATGGATGCGACTCTGACCTGAGTGATTGCAGAGAGTATCATCGGCGGCACAGAGTGTGTGAGAAGCACTCCAAAACTCCGATTGTGTTGGTAGGGGGAAAGCAGCAGCGTTTCTGCCAGCAATGCAGCAGATTTCATTCTCTGGGGGAGTTTGATGAGGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGACATAATAGGCGCAGAAGGAAGCCTCAGCCTCCTTCTCTTTTCATGGCTGCTGAGAAATTTCTGAGCAGTTACAGTTACAAAGGACCCAGAATCCTGCATTTTGGTAGTCCTCAGACATACGCCAACCCATATATGAGAACTATGTGGCCTGCCGCTACCAAAGCTGGAGCAGAACCAATGACTATAAGTTATGATCAACAAAATCTGCTATGTTCCTTCGCTAACAACCAGCATCAGCAGGATAAGTCTCTCCCTCTCTCACAGGCTAATGGCCCTAAAGCAGGCTATGGCAAGGATGCAGTGTCTGGAATTCCAATGAGCCAGTCAATTTCTGGTGCTATTTCCTCATCAGCGAGTGGAAAGGTTCACCAGAAGCTCTCTTCTGATTGCAAACCCGGATCTTTTGACCCGGGTTGTGCTCTCTATCTTCTGTCAACACTTAAAACACAAAGTTCAGAGATGAGCTTGGTGCAGTCCACCATAACTTATCCAATGCAGTCATCTCCATTGGAACATATGAATTTTGATGCTGGCGACAAGTATTCATGCACAGAAAGTCCACGAGAAAAGCCTACTGATCCAGAATTGGTTGCTGATGCCAATACAACCAACCTTTATTGCAACGAGGTGCTCCGTATGAGGCCTGACGGGTTGGAGGAAAATGGTGACTCGCTGACCCTTCCATTTTTCTGGGAATAA 1104 0.4819 MDWDWKEFAWDPYGSELSNDAASVDLRLGDTSDSVEKSSAHKPQSRESKSEVSACGSSKRSRTQQNVSCSVDGCDSDLSDCREYHRRHRVCEKHSKTPIVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFLSSYSYKGPRILHFGSPQTYANPYMRTMWPAATKAGAEPMTISYDQQNLLCSFANNQHQQDKSLPLSQANGPKAGYGKDAVSGIPMSQSISGAISSSASGKVHQKLSSDCKPGSFDPGCALYLLSTLKTQSSEMSLVQSTITYPMQSSPLEHMNFDAGDKYSCTESPREKPTDPELVADANTTNLYCNEVLRMRPDGLEENGDSLTLPFFWE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1687 367 MobiDBLite consensus disorder prediction 28 59 - -
Sto8g1687 367 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 15 367 - -
Sto8g1687 367 MobiDBLite consensus disorder prediction 30 48 - -
Sto8g1687 367 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Sto8g1687 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 367 IPR044817 GO:0003677
Sto8g1687 367 MobiDBLite consensus disorder prediction 311 330 - -
Sto8g1687 367 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Sto8g1687 367 Pfam SBP domain 69 142 IPR004333 GO:0003677
Sto8g1687 367 SUPERFAMILY SBT domain 67 148 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1687 Sto-Chr8 10819915 10821514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1687 63 186 SBP-box Gene Family AT5G50670 57.258 4.61e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto8g1687 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1687 - - lja:Lj1g3v3847150.1 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1687 8 10819915 10821514 Sto8g1687 8 10819915 10821514 ECH