Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1650 ATGGGCTTGCCACAAATACCCTTAAGTGGAACTGCTGAAGAAGTTTCATCAGTAGCAGCAGTTTTGCGTAGCTCACCTCAGTTTTCTGATGCAAGCCCCTCTGATATGAACAATGTGCACAGTGGAAGTACTAGTGGATTGGCTGCATATCCTCGGGGTCACTCATTTATTGATTTCTCCAAGAAAGCCTCTTTAGAAACTTCGAATGCATCTGATAATATGTGTTATTATAGAGGAGCCATTGAGGTCACTTCGAATGTCCACAGCCTGAAGATTGGTTCTTCAGATAGAAGTGGTTTTTATGCTTCGAGTAATGGGCGAGGTATTCCTATCCCTGCTTCTAGGATTGTTGGTTTTGAATCAGGCCCAACAAGTTCTTTAACTGATGGATTGATGGGAGTTCCAGCTGCAAATCTTCATTCTTCTGCTGTTACTGATGTCACAGCCAATGATACTGAACCTGCCAATTCATTGGTCAGGAAGCGGCTCCTATCACCATTGAGCAGTTTGCTCTCCCCAAGTCATTTCAAAGGTGATCCTCTTGACATTGGCTGCAGAAACACTGAGACTGGCTCCCTTGTCAAGAGTGATAATTTCAAAACTTCAGTTGCACAAGATAATAAGGGCAAATATTGGAATGAACTACTATCTCCTAGTATTTGTTCATCCACAGCTGCAATTGACCACTTTGGAGAATCAAATCAAGTGAAACTCCAGAGAGGTGTGATATCCACATCCCCTAGGAAGGTGAACTCGCCTCCTCTTTCCTTCTCACCTCTTGGTCCTAAATTTTCTGAAAGGATAAAAACTGCAGGAGGATGTAGGAATACCATTAAAGAGACTAAGAATTGTGATAGAACCTTGAAGAATATAGAACAATCGCTGGACAAATCTAACTCATGTCTTGTGTTAAATCATAAAGAGGATGAATTAGGATATGCAAGTAAATCTTTTGAAGATGTTGATATTTTCAGCAAAGACTTTGGTCCATCTTCTTTGGATGATACTGCTGACACAAGATGGCCACTATCTCAAGAATTAGTTCCTACACCTCGCTCCATGAGGTTCACTAGAAGTTTGAGTGGGCTTCCAGTTAGGAGGTCTTTGGTTGGTTCATTTGAGGAGTCTCTTTTATCTGGCCGGTTCTTATCTGGAAACCTTAGTAAGAAGCTTCCATTTTCTGTAACCAGTGTGGATGGAGATTGCTACCTACTGTATTATGCATCAATAAATCTTGCAGGAAATTCATCTCCAAACAAGTCTAGAGGGCAACAACTGAAAAGAGGACTTAGCAATGATGATTCACAAGTTGTCAATAGCCGCTTGCGAATCCCTATGAAAGGACGTATACAACTGGTGCTAAGCAATCCAGAAAAGACTCCCCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCAGCTGGTACCAAAACATTCATGCGTCAGAAAGTCACCCTTGAATCTTCCAGCTCAACTTCCCCCCAGTTGAAGCACTGTCCAACTGTTCTGAACAATGATATCACAGCAAAACAAAAGAATCATGATGTAGCATGTGGAGAATCAATGCATACAGATGCTGTTGACAttgtaaataaaacaaaatctAAAGGAACAGTACTGGGTAGTAGAACATGTGAAGAATCTGGGAAAACATTGCATGCCTGTTCAAAGGTCAATGAGAATAATAATAGTGCTGGCCCTCTTCGTTATGCTCTTCACCTCCGCTTTATTTGCCCTGTACCTAAGAAAACTACTAGATCAGTTCAGAAATCCCGGCCTAATTCACTTCCAGAAAAGACTGGATTGTGTATGGAAGGGGAACGCAGATTCTACTTATATAATGATTTGAGGGTTGTCTTCCCTCAACGCCATTCAGATGCTGATGAGGGCAAGGGCGCAATGCTTTTTATCTTTGAGGAGCAGCAGATTAATCATAAAGCTGTGATTGTATTTGTAAaaataattaaaagaagaaagagattaAAAATGGGAGAATCAGGCGGAGGAGGGATGTACGAGTACGACTTCCTGAACCAGGTCTCATCATCGGCTTCAAGAAATAATGGCAAGATATGTTCAGCCGCAGCAGCTTCTTCTCCCTCCACCACTCATCGCACATTCCAATGCAAATATTGCCCTCGCAGGTTCTTCACCTCCCAAGCTCTCGGTGGCCACCAGAACGCCCACAAGCGCGAGAGAGCCGCCGCCGCCGCTCATCATGCCCGCACCCACATCCACCCACCTGCTTTACCCCAACCCAACCCCAACCCCAATCCTCCTCCTCATTTCTTCGACCACTATTGGCTCCACCTTGAACTCGATCCCTCCATCCACATCAACCATCACCGTCTTCCTCCTACTCCTCCCTTTCATTCTGCTCCCGCCCCTGATACTGTTGCTGATCATCTCACCCTTGACCTCACCCTTCGCTTATAA 2442 0.4324 MGLPQIPLSGTAEEVSSVAAVLRSSPQFSDASPSDMNNVHSGSTSGLAAYPRGHSFIDFSKKASLETSNASDNMCYYRGAIEVTSNVHSLKIGSSDRSGFYASSNGRGIPIPASRIVGFESGPTSSLTDGLMGVPAANLHSSAVTDVTANDTEPANSLVRKRLLSPLSSLLSPSHFKGDPLDIGCRNTETGSLVKSDNFKTSVAQDNKGKYWNELLSPSICSSTAAIDHFGESNQVKLQRGVISTSPRKVNSPPLSFSPLGPKFSERIKTAGGCRNTIKETKNCDRTLKNIEQSLDKSNSCLVLNHKEDELGYASKSFEDVDIFSKDFGPSSLDDTADTRWPLSQELVPTPRSMRFTRSLSGLPVRRSLVGSFEESLLSGRFLSGNLSKKLPFSVTSVDGDCYLLYYASINLAGNSSPNKSRGQQLKRGLSNDDSQVVNSRLRIPMKGRIQLVLSNPEKTPLHTFFCNYDLSDMPAGTKTFMRQKVTLESSSSTSPQLKHCPTVLNNDITAKQKNHDVACGESMHTDAVDIVNKTKSKGTVLGSRTCEESGKTLHACSKVNENNNSAGPLRYALHLRFICPVPKKTTRSVQKSRPNSLPEKTGLCMEGERRFYLYNDLRVVFPQRHSDADEGKGAMLFIFEEQQINHKAVIVFVKIIKRRKRLKMGESGGGGMYEYDFLNQVSSSASRNNGKICSAAAASSPSTTHRTFQCKYCPRRFFTSQALGGHQNAHKRERAAAAAHHARTHIHPPALPQPNPNPNPPPHFFDHYWLHLELDPSIHINHHRLPPTPPFHSAPAPDTVADHLTLDLTLRL 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1650 813 SUPERFAMILY beta-beta-alpha zinc fingers 705 736 IPR036236 -
Sto8g1650 813 MobiDBLite consensus disorder prediction 740 761 - -
Sto8g1650 813 PANTHER GH03947P 1 208 - -
Sto8g1650 813 PANTHER GH03947P 215 642 - -
Sto8g1650 813 ProSiteProfiles Zinc finger C2H2 type domain profile. 709 736 IPR013087 -
Sto8g1650 813 Gene3D Classic Zinc Finger 684 749 - -
Sto8g1650 813 SMART DUF4210_2 369 407 IPR025261 -
Sto8g1650 813 Pfam Chromosome segregation during meiosis 570 633 IPR033473 -
Sto8g1650 813 ProSitePatterns Zinc finger C2H2 type domain signature. 711 731 IPR013087 -
Sto8g1650 813 PANTHER MEIOSIS CHROMOSOME SEGREGATION FAMILY PROTEIN 215 642 - -
Sto8g1650 813 PANTHER MEIOSIS CHROMOSOME SEGREGATION FAMILY PROTEIN 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1650 Sto-Chr8 10599042 10606526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1650 678 738 C2H2 Transcription Factor Family AT5G14010 55.738 1.96e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g1650 Chromosome_seg 7.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1650 - - gmx:100819038 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1650 8 10599042 10606526 Sto8g1650 8 10599042 10606526 ECH