Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1647 ATGCTACTTCCCTGCGATTTCTGCGATTCAAACATGGCGGTGCTCTTGTGTAAAGCTGATTCAGCCAAGCTGTGTTTGTTATGCGACCAACACGTTCACTCCGCCAATGCACTCTCCCTCAGGCACGTTCGTTTCAAGATTTGCGACACCTGCAAATTCCAAACCGCCACCGTTCGCTGTTCAACCCACAACCTCATGCTCTGCCAACAATGCGATTCCCACActcacaacaacaacaacaaaaactcTTCTTTATCTTCCTCACTCCACCACCGCACCCCAATCCAAGGCTTCTCTGGCTGCCCCTCCATTCTCGACCTCGCACCATTCCTTGGCTTCGATTTTCACCCATCTTATGATTCCTCTGTTTCTTCTTCCTTGTCAGAAGACCAGAGTTTGATTTACGAGCAAATAGTGGAAATGGGAAGGAGAAATTCAGGTGAAGATGGAGTCCAAGTATCCGGTCTTGATCAGCTGAACAATGAGATGGACGATGTTTTGGTGCAGCAAATGCCGTTAGTGTCTTTGCTTATCTTGccagaagatgatgatatgggCGTAAGAGAAAATGGGGGCGAAACAGAGGAATTACATCTTCCATCGTGGGACTCTAATCCCACAAATGGAGCTACACAGTTAGGAAAATCAAGAGACTGCGCAGAACAAAACATACTCAAATTTGAGGATCTACAATCATTGCAAGATGTATGCAATTTCAATAGGAATGTCTCAACAAATGGTGTTGATATACAGTCCAGAAATGAGCAATCAGATGAATCATCATCGAACCATGagatgaagaaagaagaaagcaaaAAGAAAGGTCGAGTTGGAATGTTATGTTCATCAGAGTCAACGTTAATTGAATCTATAATGAAGGAGGATGTTGAGGATAGGAGTGAAAGTGGTAGCTCCTCTATGATACCAAAGGTTAGGTTGGAAGAGATAGCCAAGAATAGAGGCGATGCCATGCTACGCTAcagggagaagaagaagacacgAAGGTATGATAAGCAGATTCGGTACGAATCCAGGAAGGCAAGGGCTGATATGAGAAAACGTGTGAAAGGGCGGTTTGTGAAGGCAAGTGATACAGCAGAAACAGATGCACAAATATGA 1119 0.4111 MLLPCDFCDSNMAVLLCKADSAKLCLLCDQHVHSANALSLRHVRFKICDTCKFQTATVRCSTHNLMLCQQCDSHTHNNNNKNSSLSSSLHHRTPIQGFSGCPSILDLAPFLGFDFHPSYDSSVSSSLSEDQSLIYEQIVEMGRRNSGEDGVQVSGLDQLNNEMDDVLVQQMPLVSLLILPEDDDMGVRENGGETEELHLPSWDSNPTNGATQLGKSRDCAEQNILKFEDLQSLQDVCNFNRNVSTNGVDIQSRNEQSDESSSNHEMKKEESKKKGRVGMLCSSESTLIESIMKEDVEDRSESGSSSMIPKVRLEEIAKNRGDAMLRYREKKKTRRYDKQIRYESRKARADMRKRVKGRFVKASDTAETDAQI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1647 372 ProSiteProfiles CCT domain profile. 320 362 IPR010402 GO:0005515
Sto8g1647 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 3 366 - -
Sto8g1647 372 MobiDBLite consensus disorder prediction 188 212 - -
Sto8g1647 372 CDD Bbox1_BBX-like 4 45 - -
Sto8g1647 372 MobiDBLite consensus disorder prediction 258 277 - -
Sto8g1647 372 MobiDBLite consensus disorder prediction 248 278 - -
Sto8g1647 372 ProSiteProfiles Zinc finger B-box type profile. 43 95 IPR000315 GO:0008270
Sto8g1647 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 366 - -
Sto8g1647 372 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sto8g1647 372 Pfam CCT motif 320 362 IPR010402 GO:0005515
Sto8g1647 372 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1647 Sto-Chr8 10565370 10567304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1647 2 364 C2C2-CO-like Transcription Factor Family AT2G33500 33.577 1.20e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto8g1647 CCT 6.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1647 - - aprc:113862926 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1647 8 10565370 10567304 Sto8g1647 8 10565370 10567304 ECH