Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1624 TTGAACAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTCCCTTTTGATCACGAGGATGTATCAGAAGAGGCAGAACAGATCAAAAGGGAACAAGATTACAATTTCTTGCTGTTTGATGATACTACTACTCATCATCACACATCTGATCAAAGTCAGAGTCAGAGTGATCAGACCCACCACAAGCAGGAAGAAGCATCACCCTCTCCCTTTTCGTATCTCATCACCAATAATAATACCACTCATACTATCCCGACCACCTCTTCCACTTCTGGCTTGATCCAGATTAAGCACCACCCTATACATCAAGCTCAAGGGAGGAAAAAAAACTACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGAGACCCAAAGAAGGCAGCCCGAGTTTGGCTGGGCACATTTGAGACGGCGGAGGATGCGGCGGCGGCTTATGACGCCGCCGCCTTGAAATTCAAAGGAAACAAAGCGAAGCTTAATTTCCCGGAACGTGTCACTTTACCAATTACCTCAACAGCAACAGATCCTAATTCTCAATATGAAGAGCAAGGGTTCCCCAACCTCTGGCAGTATGCTCAGCTGCTTCGTGGTGATAATAATGATATTATTGGAGCTGATCCACAATTACCACCTGCTTCTTCGGGCCttcacaataataatattagtgcAGGCCCCATTGTTTATGATTTCTCCTCCTCCTCGGGAATCTCATCTTCCACCTCGTCTGCTTCTATGtctgatcatcatcatcaacaccAGCAGCTTCAACATCATTATGCTGCTTCTCCCgcttcttattctttttttgatcaaaaCAACACAAGGGGATAG 843 0.4448 LNKVDRRHGKRPLPFDHEDVSEEAEQIKREQDYNFLLFDDTTTHHHTSDQSQSQSDQTHHKQEEASPSPFSYLITNNNTTHTIPTTSSTSGLIQIKHHPIHQAQGRKKNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAAAYDAAALKFKGNKAKLNFPERVTLPITSTATDPNSQYEEQGFPNLWQYAQLLRGDNNDIIGADPQLPPASSGLHNNNISAGPIVYDFSSSSGISSSTSSASMSDHHHQHQQLQHHYAASPASYSFFDQNNTRG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1624 280 MobiDBLite consensus disorder prediction 64 80 - -
Sto8g1624 280 MobiDBLite consensus disorder prediction 1 35 - -
Sto8g1624 280 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Sto8g1624 280 CDD AP2 108 167 IPR001471 GO:0003700|GO:0006355
Sto8g1624 280 PIRSF PTI6 16 188 IPR017392 GO:0003700
Sto8g1624 280 PIRSF PTI6 220 278 IPR017392 GO:0003700
Sto8g1624 280 MobiDBLite consensus disorder prediction 1 80 - -
Sto8g1624 280 MobiDBLite consensus disorder prediction 242 263 - -
Sto8g1624 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 43 266 - -
Sto8g1624 280 PANTHER DNA-BINDING DOMAIN 43 266 IPR044808 GO:0003700|GO:0009873
Sto8g1624 280 MobiDBLite consensus disorder prediction 36 55 - -
Sto8g1624 280 SUPERFAMILY DNA-binding domain 109 167 IPR016177 GO:0003677
Sto8g1624 280 Gene3D AP2/ERF domain 108 168 IPR036955 GO:0003700|GO:0006355
Sto8g1624 280 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Sto8g1624 280 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Sto8g1624 280 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Sto8g1624 280 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1624 Sto-Chr8 10434009 10435142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1624 99 195 AP2-EREBP Transcription Factor Family AT5G61890 72.277 1.36e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g1624 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1624 - - ccaj:109818971 166.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1624 8 10434009 10435142 Sto8g1624 8 10434009 10435142 ECH
Sto8g1624 8 10434009 10435142 Sto13g0641 13 5933252 5945913 ECH