Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1610 ATGGGATGGAGAGGGAAGGGTGGGGAGGTTGTTGAAATGAATTGTTTGTGTGGGAATTACAAACGTGAGCCTCCCATGTCTTCTTTGCAAGTATCAGCACGAACGGGTCGACATCGACAACGTTATGAAGACAAGTTGCGTCTTGTCTCTGGATGCATTCCCTATAGATGGAGAAAGGAGAAGACAGGTCAAAAGGGAGATACAGAGGACATTATAGAAGTTCTTATGGTTTCTTCACCAAAACGTGACGACCTTGTATTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTCATGGAAGCTGCTTGCCGTGAAGTGTTGGAAGAAGCAGGAGTCAAGGGAATACTAAGAgAAACCCCCTTAGGAATGTGGGAGTTTAGAAGCAAAAGCAGCCAGAACTTATGCTGCCTGGAAGGAGGCTGCAGAGGATACATGTTTGCCTTAGAGGTTACTGAAGAACTTGACACCTGGCCAGAGCAGAAAAACCGTAATCGCAAATGGTTGAACATAAGAGAGGCATTTAGACTTTGCCGGTACGAATGGATGTGTCAAGCGCTGGAGGAGTTTTTGCGAGTTATGGCAGAAGAAAGAAATTTGAAGACGGGCGAGCAAGTGAATCCTTCTTCAAATTCAAAGGGGAAGACTGTGGAACTTATCATTGATTTGGCTCAAATTGGGTGCACATGGCACTTGATGAACTCGTTTACTTCGTCATCCCCGTCCAAGGCCAAAAAGAAGCAAACGGCCACAACAAGCGCCAAGACACAAGAGCAACAACATGGAACGGCGTGGGGAGGAAGGTACCTGGGTGTTCGGAGGAGGCCTTGGGGAAGATACGCGGCGGAGATTAGAGACCCTTCCACCAAAGAAAGGCATTGGCTTGGCACCTTTGATACTGCTGAGGAAGCTGCCTTAGCCTATGACCGAGCCGCACGCTCCATGCGCGGCTCTCGCGCACGAACCAACTTCGTCTACTCCGATACTCCTCCGGGCTCCTCCGTGACCCCCATTATCTCCCCCGACGAAGAAACCCAACACAACCACCACGACTTTTCGTCTCTTTTCACCGCGAACTCGGTCGCCCACCAACAACCCGACCCGAGTGATCGGCCCACGGAGTTCAATATCTCGGGTGGATTTCTAGGGATCACGGATAATGACGCATGGGCAGCTTCTTCAGGGATTTATTCCCAATCCCAACCATTTCAAGCACCCACCGTGGACGTGCCCAACTTCCATCAATTGTACGATGATAACAACACCGAGCTTCCTCCGTTGCCACCGGATATCACAAGCTCCACAGGCTATTACGAGAATGGGTTCGGGTATTCGGAGCAGAGCACGGGGATGGGATTTGAATCGTCGAGCTGGCCGTCGTATTCATATATGGGCTTGGATTCGGGTGAGTACGTGCATAGCCCACTGCTGAGCACAATGCCTGCGGTGTCGGAGAAGGTGCCGGAGGGTTTTGATTTCGGAAGTTCCTCATATTTGTTCTAA 1500 0.5027 MGWRGKGGEVVEMNCLCGNYKREPPMSSLQVSARTGRHRQRYEDKLRLVSGCIPYRWRKEKTGQKGDTEDIIEVLMVSSPKRDDLVFPKGGWEDDETVMEAACREVLEEAGVKGILRETPLGMWEFRSKSSQNLCCLEGGCRGYMFALEVTEELDTWPEQKNRNRKWLNIREAFRLCRYEWMCQALEEFLRVMAEERNLKTGEQVNPSSNSKGKTVELIIDLAQIGCTWHLMNSFTSSSPSKAKKKQTATTSAKTQEQQHGTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTPIISPDEETQHNHHDFSSLFTANSVAHQQPDPSDRPTEFNISGGFLGITDNDAWAASSGIYSQSQPFQAPTVDVPNFHQLYDDNNTELPPLPPDITSSTGYYENGFGYSEQSTGMGFESSSWPSYSYMGLDSGEYVHSPLLSTMPAVSEKVPEGFDFGSSSYLF 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1610 499 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 30 212 - -
Sto8g1610 499 ProSiteProfiles Nudix hydrolase domain profile. 45 190 IPR000086 -
Sto8g1610 499 ProSitePatterns Nudix box signature. 90 111 IPR020084 GO:0016787
Sto8g1610 499 Pfam NUDIX domain 74 179 IPR000086 -
Sto8g1610 499 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 30 212 - -
Sto8g1610 499 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Sto8g1610 499 PRINTS Ethylene responsive element binding protein signature 290 306 IPR001471 GO:0003700|GO:0006355
Sto8g1610 499 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 31 192 - -
Sto8g1610 499 Pfam AP2 domain 268 316 IPR001471 GO:0003700|GO:0006355
Sto8g1610 499 Gene3D AP2/ERF domain 266 325 IPR036955 GO:0003700|GO:0006355
Sto8g1610 499 SUPERFAMILY DNA-binding domain 267 325 IPR016177 GO:0003677
Sto8g1610 499 SMART rav1_2 267 330 IPR001471 GO:0003700|GO:0006355
Sto8g1610 499 ProSiteProfiles AP2/ERF domain profile. 267 324 IPR001471 GO:0003700|GO:0006355
Sto8g1610 499 CDD Nudix_Hydrolase_9 48 182 - -
Sto8g1610 499 MobiDBLite consensus disorder prediction 236 262 - -
Sto8g1610 499 CDD AP2 267 323 IPR001471 GO:0003700|GO:0006355
Sto8g1610 499 SUPERFAMILY Nudix 37 197 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1610 Sto-Chr8 10332722 10342648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1610 250 494 AP2-EREBP Transcription Factor Family AT5G13910 44.922 4.97e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g1610 NUDIX 4e-09 CL0261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1610 K07766 - gmx:100780722 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1610 8 10332722 10342648 Sto8g1610 8 10332722 10342648 ECH