Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1579 ATGGATGTGTGCCGTAATGTGTCAGTTTCCGGTGAGTGCCAGCAAGAGCAGGTCCTTTCCCCTTCTTGCTCAAAGCTTTCTACTTTCTCAACCAGCCTTGACGACCTCTTCTCTGCTCAGAACACGGAGGTGGATGTTGGATTGGAGTGGTTGTCAGTATTTGTGGAAGATTGCTTCTCCAGCCCAGCAAGCTGCTTGTTGGCACCTACTACTACTACTGAAGTTCATCAAGCTAAAAACACAACCTCCAAACCCTCATCAACACCCCACCAAAACCAGTCTTGTTCTCTCCAAAAATTTCTAGTTCCTCCAGGAAAGGCCAGAAGCAAAAGGAAGAGACTTTCAGCCCCTAGGACCAACAAGGACCCTCTATCCATCTGGTCACACCATTTAAACCCCCAAAACGAACCCATAACCTCAGACCCTCCTCTTCTGAAACAAGCATACTGGTTGGCTGACAGTGAACTCATAGTCCCCaacaagaaagaagaagaaatggaggAGAAAGGTGGGGTTGTGATGATGAGGAAAGAGAGCTTGGGATTGGAAAGGTGTGAGGGTGAGATTagcaatggaaatggaaatgcaaTGCCAAGAAGGTGCAGCCATTGCCTAGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCGGGTAGGTTGCTGCCAGAGTATAGGCCGGCCAAGAGTCCTACTTTTGTGAGCTATTTGCATTCCAATTCCCACAAGAAAGTCTTGGAGATGAGAATGAGCCCTCTTTCTTCTATTCCCTCTCACCACTAG 825 0.463 MDVCRNVSVSGECQQEQVLSPSCSKLSTFSTSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSPASCLLAPTTTTEVHQAKNTTSKPSSTPHQNQSCSLQKFLVPPGKARSKRKRLSAPRTNKDPLSIWSHHLNPQNEPITSDPPLLKQAYWLADSELIVPNKKEEEMEEKGGVVMMRKESLGLERCEGEISNGNGNAMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMSPLSSIPSHH 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1579 274 MobiDBLite consensus disorder prediction 121 135 - -
Sto8g1579 274 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Sto8g1579 274 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 273 - -
Sto8g1579 274 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
Sto8g1579 274 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
Sto8g1579 274 PANTHER GATA TRANSCRIPTION FACTOR 1 273 - -
Sto8g1579 274 Gene3D - 192 263 IPR013088 GO:0006355|GO:0008270
Sto8g1579 274 MobiDBLite consensus disorder prediction 76 135 - -
Sto8g1579 274 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355|GO:0043565
Sto8g1579 274 MobiDBLite consensus disorder prediction 76 99 - -
Sto8g1579 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 258 - -
Sto8g1579 274 Pfam GATA zinc finger 201 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1579 Sto-Chr8 10132925 10134021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1579 20 263 C2C2-Gata Transcription Factor Family AT4G32890 40.711 9.59e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto8g1579 GATA 7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1579 - - gmx:100786479 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1579 8 10132925 10134021 Sto13g0266 13 2378658 2380001 CCT
Sto8g1579 8 10132925 10134021 Sto8g1579 8 10132925 10134021 ECH