LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g1554	ATGTTCTTGCTCCGCTTCTATCCTGATCTGGTTTTGGCTGTGATGAGATGGTTTATTTCTCTTTGGTTGCGTGTTGGCCAATCTGAATGCGAGTTTTATAAGTTTGATTCATTTGAGATCCCACGTGGGCAAGGTCATGGAGGTGGAGATGTTGAGCTTGGGGAATATGCAACGAATGCAGGAGACACAGGCTTGGATAACTTCTTCAAAAAgGTTCAAGAGCTTGATAAACAATTTGCAAAACTGGATAAGCTTCTGAGAAAGCTCCAGGATGCCCACGAGGAGTCTAAAGCTGTCACCAAGGCTCCTTCCATGAAGGCTATTAAGCAAAGAATGGAGAAAGATGTTGATGAGGTCAAGAAAATTGCTCATTTTATCAAATCAAAAATTGAAGAACTTGACAAAGAGAATTTGGCAAATAGGCAGAAGCCCGGGTGCGGAAAAGGAACAGGTGTTGACCGTTCAAGAACATCAACAACCATTGCCTTAAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGGTCCTGCGAGAAGCCATCCATCAAGAATATCGTGAGGTTGTTGAGAGACGCGTCTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGATAGATTAATAGAGACTGGAGATAGTGAGCAAATTTTCCAGAAGGCTATTCAGGAACAAGGACGAGGCCAGATAATAGACACCCTGGCAGAAATCCAAGAACGGCACGAAGCAGTTAGAGAAGTTGAGAAGAAACTTCTTGAATTACAACAGATATTCATGGATATGGCAGTTCTAGTTGATGCACAGGGAGACATGCTTGACAACATAGAATCACAGGTCTCAACTGCAGTAGATCATGTGCAGCAAGGCAACACTGCCCTCCAGAAGGCCAAAAGCCTCCAAAAGAATTCTAGAAAATGGATGTGCGTTGCAATCCTTATACTTCTTATCGTTGTTATAATCATAGTCGTTGCTGTCATCAAACCATGGGCCAATAAGGGCGCTTAG	1008	0.4286	MFLLRFYPDLVLAVMRWFISLWLRVGQSECEFYKFDSFEIPRGQGHGGGDVELGEYATNAGDTGLDNFFKKVQELDKQFAKLDKLLRKLQDAHEESKAVTKAPSMKAIKQRMEKDVDEVKKIAHFIKSKIEELDKENLANRQKPGCGKGTGVDRSRTSTTIALKKKLKDKMAEFQVLREAIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIIDTLAEIQERHEAVREVEKKLLELQQIFMDMAVLVDAQGDMLDNIESQVSTAVDHVQQGNTALQKAKSLQKNSRKWMCVAILILLIVVIIIVVAVIKPWANKGA	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g1554	335	ProSitePatterns	Syntaxin / epimorphin family signature.	241	280	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Sto8g1554	335	PANTHER	-	36	327	-	-
	Sto8g1554	335	CDD	SNARE_syntaxin1-like	234	296	-	-
	Sto8g1554	335	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	235	297	IPR000727	-
	Sto8g1554	335	PANTHER	SYNTAXIN	36	327	IPR045242	-
	Sto8g1554	335	SUPERFAMILY	t-snare proteins	63	290	IPR010989	GO:0016020\|GO:0016192
	Sto8g1554	335	SMART	tSNARE_6	230	297	IPR000727	-
	Sto8g1554	335	Coils	Coil	72	102	-	-
	Sto8g1554	335	SMART	SynN_4	60	186	IPR006011	GO:0016020
	Sto8g1554	335	Gene3D	-	61	189	-	-
	Sto8g1554	335	Pfam	Syntaxin	67	270	IPR006011	GO:0016020
	Sto8g1554	335	Coils	Coil	164	184	-	-
	Sto8g1554	335	CDD	SynN	65	222	IPR006011	GO:0016020
	Sto8g1554	335	Coils	Coil	116	136	-	-
	Sto8g1554	335	Gene3D	-	228	328	-	-
	Sto8g1554	335	Pfam	SNARE domain	271	323	IPR000727	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g1554	Sto-Chr8	9986221	9991873	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g1554	37	335	SNARE and Associated Proteins	AT3G03800	72.575	1.22e-150	424

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g1554	K08486		-	gmx:100306329	508.449