Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g1531 ATGATGCGCCTGATGTTGGAACCCCTTTCCAAATCGTGTAAATTCAATGAGGAAGAGAAAGGCGACAAAAGACCTGTCTTCCTTCAATGCGCAGAGCTGATTCTCCCATGGCTGACCCCTTCGGAGCTTGCCAATGTCTCTTTGACATGCAAAGCCTTTTACCAAATCTGCAAGACCATCACTCTCCGTCGTTCATCTGATTCTTCTAGAGGGTTCGAGAATTTGGCTATCCCATTTCACAACACCGTCGATACTCACCCGTACGTCTTCTTCATCTACACTCCTTCCCTAATTATATCCTCTGGTTCACAACTTCGTCGTCAATCTTGGGGTTCAGAATTTCCAGCCAGCCCCAACTGGGTCAGTGATCTTGCTGTGGAAACCGTGAGTTTAGTTGATGAGAAGGGTGAGAGTGTATCTGGCTGCGATTGTGAAACCTGTGGGGATGTGGGGGATGAAGGCAACGGGTGTCCTTGTTCGAGGTTGGCTGGATTGGATGTGGCTAGCGAGTGCGGACCGAGTTGTGGATGCGGGTTGAAGTGTGGGAATCGGTTGAGTCAGAAGGGAATTTCAGTTCGATTGAAGATTGCGAGggataaaagaaaaggatgggGTTTGTATGCTGACCAGTTGATTCAGAAAGGACAGTTCATATGTGAATATGCAGGTGAACTCTTGACAACCGAGGAAGCAAGGAAGAGACATAAATATTATGATGAGCTCACATCACATGCTCATTTTTCTTCTGCTCTTCTGGTTGTACGGGAGCATCTGCCATCTGGGAAGGCATGTTTGAGAATTAACATTGATGCCACAAGCATAGGAAATGTCGCAAGGTTCATTAATCATTCTTGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGGTCGGGAGCATTGCTTCCTCGACTTTGCTTTTTCGCTTCGAAAGACATTCAAGAAGATGAAGAGCTTACTTTCAGCTATGGAGAAATCAGGAAGAGGCCCAGGGGTTTGCCATGCTTTTGTGATAGCTCCTCTTGCTTTGGAACATTGCCCTCAGAAGAAACTTAA 1056 0.4527 MMRLMLEPLSKSCKFNEEEKGDKRPVFLQCAELILPWLTPSELANVSLTCKAFYQICKTITLRRSSDSSRGFENLAIPFHNTVDTHPYVFFIYTPSLIISSGSQLRRQSWGSEFPASPNWVSDLAVETVSLVDEKGESVSGCDCETCGDVGDEGNGCPCSRLAGLDVASECGPSCGCGLKCGNRLSQKGISVRLKIARDKRKGWGLYADQLIQKGQFICEYAGELLTTEEARKRHKYYDELTSHAHFSSALLVVREHLPSGKACLRINIDATSIGNVARFINHSCDGGNLSTKLVRRSGALLPRLCFFASKDIQEDEELTFSYGEIRKRPRGLPCFCDSSSCFGTLPSEET 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g1531 351 SUPERFAMILY SET domain 62 337 IPR046341 -
Sto8g1531 351 Gene3D SET domain 51 330 IPR046341 -
Sto8g1531 351 SUPERFAMILY F-box domain 30 74 IPR036047 GO:0005515
Sto8g1531 351 ProSiteProfiles SET domain profile. 192 324 IPR001214 GO:0005515
Sto8g1531 351 Pfam SET domain 203 324 IPR001214 GO:0005515
Sto8g1531 351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 19 340 - -
Sto8g1531 351 SMART set_7 192 330 IPR001214 GO:0005515
Sto8g1531 351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 19 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g1531 Sto-Chr8 9753663 9755058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g1531 170 346 C2H2 Transcription Factor Family AT2G23740 36.316 2.75e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto8g1531 SET 6.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g1531 K11433 - jre:109003288 480.33